DNA repeat arrays in chicken and human genomes and the adaptive evolution of avian genome size

by Hughes, Austin L, Piontkivska, Helen
Published 2005

Molecular phylogenetics of Trypanosomatidae: contrasting results from 18S rRNA and protein phylogenies

by Hughes, Austin L, Piontkivska, Helen
Published 2003

Reassortment of Ancient Neuraminidase and Recent Hemagglutinin in Pandemic (H1N1) 2009 Virus

by Bhoumik, Priyasma, Hughes, Austin L.
Published 2010

dN/dS does not show positive selection drives separation of polar-tropical SAR11 populations

by Luo, Haiwei, Hughes, Austin L
Published 2012

Low Level of Sequence Diversity at Merozoite Surface Protein-1 Locus of Plasmodium ovale curtisi and P. ovale wallikeri from Thai Isolates

by Putaporntip, Chaturong, Hughes, Austin L., Jongwutiwes, Somchai
Published 2013

Evolution of Divergent Life History Strategies in Marine Alphaproteobacteria

by Luo, Haiwei, Csűros, Miklós, Hughes, Austin L., Moran, Mary Ann
Published 2013

A genome-wide screen identifies a single β-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins

by Xiao, Yanjing, Hughes, Austin L, Ando, Junko, Matsuda, Yoichi, Cheng, Jan-Fang, Skinner-Noble, Donald, Zhang, Guolong
Published 2004

Experimental Analysis of Sources of Error in Evolutionary Studies Based on Roche/454 Pyrosequencing of Viral Genomes

by Becker, Ericka A., Burns, Charles M., León, Enrique J., Rajabojan, Saravanan, Friedman, Robert, Friedrich, Thomas C., O'Connor, Shelby L., Hughes, Austin L.
Published 2012

SIV Genome-Wide Pyrosequencing Provides a Comprehensive and Unbiased View of Variation within and outside CD8 T Lymphocyte Epitopes

by Hughes, Austin L., Becker, Ericka A., Lauck, Michael, Karl, Julie A., Braasch, Andrew T., O’Connor, David H., O’Connor, Shelby L.
Published 2012

Cross-clade simultaneous HIV drug resistance genotyping for reverse transcriptase, protease, and integrase inhibitor mutations by Illumina MiSeq

by Dudley, Dawn M, Bailey, Adam L, Mehta, Shruti H, Hughes, Austin L, Kirk, Gregory D, Westergaard, Ryan P, O’Connor, David H
Published 2014

Genetic Diversity of Near Genome-Wide Hepatitis C Virus Sequences during Chronic Infection: Evidence for Protein Structural Conservation Over Time

by Li, Hui, Hughes, Austin L., Bano, Nazneen, McArdle, Susan, Livingston, Stephen, Deubner, Heike, McMahon, Brian J., Townshend-Bulson, Lisa, McMahan, Rachel, Rosen, Hugo R., Gretch, David R.
Published 2011

Acute Phase CD8+ T Lymphocytes against Alternate Reading Frame Epitopes Select for Rapid Viral Escape during SIV Infection

by Walsh, Andrew D., Bimber, Benjamin N., Das, Arpita, Piaskowski, Shari M., Rakasz, Eva G., Bean, Alexander T., Mudd, Philip A., Ericsen, Adam J., Wilson, Nancy A., Hughes, Austin L., O'Connor, David H., Maness, Nicholas J.
Published 2013

Selection on hemagglutinin imposes a bottleneck during mammalian transmission of reassortant H5N1 influenza viruses

by Wilker, Peter R., Dinis, Jorge M., Starrett, Gabriel, Imai, Masaki, Hatta, Masato, Nelson, Chase W., O’Connor, David H., Hughes, Austin L., Neumann, Gabriele, Kawaoka, Yoshihiro, Friedrich, Thomas C.
Published 2013

CD8+ T Cells from SIV Elite Controller Macaques Recognize Mamu-B*08-Bound Epitopes and Select for Widespread Viral Variation

by Loffredo, John T., Friedrich, Thomas C., León, Enrique J., Stephany, Jason J., Rodrigues, Denise S., Spencer, Sean P., Bean, Alex T., Beal, Dominic R., Burwitz, Benjamin J., Rudersdorf, Richard A., Wallace, Lyle T., Piaskowski, Shari M., May, Gemma E., Sidney, John, Gostick, Emma, Wilson, Nancy A., Price, David A., Kallas, Esper G., Piontkivska, Helen, Hughes, Austin L., Sette, Alessandro, Watkins, David I.
Published 2007

AIDS virus–specific CD8+ T lymphocytes against an immunodominant cryptic epitope select for viral escape

by Maness, Nicholas J., Valentine, Laura E., May, Gemma E., Reed, Jason, Piaskowski, Shari M., Soma, Taeko, Furlott, Jessica, Rakasz, Eva G., Friedrich, Thomas C., Price, David A., Gostick, Emma, Hughes, Austin L., Sidney, John, Sette, Alessandro, Wilson, Nancy A., Watkins, David I.
Published 2007

High Genetic Diversity and Adaptive Potential of Two Simian Hemorrhagic Fever Viruses in a Wild Primate Population

by Bailey, Adam L., Lauck, Michael, Weiler, Andrea, Sibley, Samuel D., Dinis, Jorge M., Bergman, Zachary, Nelson, Chase W., Correll, Michael, Gleicher, Michael, Hyeroba, David, Tumukunde, Alex, Weny, Geoffrey, Chapman, Colin, Kuhn, Jens H., Hughes, Austin L., Friedrich, Thomas C., Goldberg, Tony L., O'Connor, David H.
Published 2014