Inferring Polymorphism-Induced Regulatory Gene Networks Active in Human Lymphocyte Cell Lines by Weighted Linear Mixed Model Analysis of Multiple RNA-Seq Datasets

by Zhang, Wensheng, Edwards, Andrea, Flemington, Erik K., Zhang, Kun
Published 2013

Expanding the Conversation on High-Throughput Virome Sequencing Standards To Include Consideration of Microbial Contamination Sources

by Strong, Michael J., Lin, Zhen, Flemington, Erik K.
Published 2014

miRNA-Mediated Relationships between Cis-SNP Genotypes and Transcript Intensities in Lymphocyte Cell Lines

by Zhang, Wensheng, Edwards, Andrea, Zhu, Dongxiao, Flemington, Erik K., Deininger, Prescott, Zhang, Kun
Published 2012

miRNA-mRNA Correlation-Network Modules in Human Prostate Cancer and the Differences between Primary and Metastatic Tumor Subtypes

by Zhang, Wensheng, Edwards, Andrea, Fan, Wei, Flemington, Erik K., Zhang, Kun
Published 2012

Co-treatment with arsenic trioxide and ganciclovir reduces tumor volume in a murine xenograft model of nasopharyngeal carcinoma

by Sides, Mark D, Sosulski, Meredith L, Luo, Fayong, Lin, Zhen, Flemington, Erik K, Lasky, Joseph A
Published 2013

The Sequence Structures of Human MicroRNA Molecules and Their Implications

by Fang, Zhide, Du, Ruofei, Edwards, Andrea, Flemington, Erik K., Zhang, Kun
Published 2013

RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datasets

by Xu, Guorong, Strong, Michael J., Lacey, Michelle R., Baribault, Carl, Flemington, Erik K., Taylor, Christopher M.
Published 2014

Global transcript structure resolution of high gene density genomes through multi-platform data integration

by O'Grady, Tina, Wang, Xia, Höner zu Bentrup, Kerstin, Baddoo, Melody, Concha, Monica, Flemington, Erik K.
Published 2016

Integrative Genomics and Transcriptomics Analysis Reveals Potential Mechanisms for Favorable Prognosis of Patients with HPV-Positive Head and Neck Carcinomas

by Zhang, Wensheng, Edwards, Andrea, Fang, Zhide, Flemington, Erik K., Zhang, Kun
Published 2016

Isoform-level microRNA-155 target prediction using RNA-seq

by Deng, Nan, Puetter, Adriane, Zhang, Kun, Johnson, Kristen, Zhao, Zhiyu, Taylor, Christopher, Flemington, Erik K., Zhu, Dongxiao
Published 2011

Epstein - Barr virus latent membrane protein 1 suppresses reporter activity through modulation of promyelocytic leukemia protein-nuclear bodies

by Sides, Mark D, Block, Gregory J, Chadwick, Reid W, Shan, Bin, Flemington, Erik K, Lasky, Joseph A
Published 2011

Induction of long intergenic non-coding RNA HOTAIR in lung cancer cells by type I collagen

by Zhuang, Yan, Wang, Xiang, Nguyen, Hong T, Zhuo, Ying, Cui, Xinpeng, Fewell, Claire, Flemington, Erik K, Shan, Bin
Published 2013

Differential regulation of microRNA-146a and microRNA-146b-5p in human retinal pigment epithelial cells by interleukin-1β, tumor necrosis factor-α, and interferon-γ

by Kutty, R. Krishnan, Nagineni, Chandrasekharam N., Samuel, William, Vijayasarathy, Camasamudram, Jaworski, Cynthia, Duncan, Todd, Cameron, Jennifer E., Flemington, Erik K., Hooks, John J., Redmond, T. Michael
Published 2013

microRNA regulation of mammalian target of rapamycin expression and activity controls estrogen receptor function and RAD001 sensitivity

by Martin, Elizabeth C, Rhodes, Lyndsay V, Elliott, Steven, Krebs, Adrienne E, Nephew, Kenneth P, Flemington, Erik K, Collins-Burow, Bridgette M, Burow, Matthew E
Published 2014

miR-155 induced transcriptome changes in the MCF-7 breast cancer cell line leads to enhanced mitogen activated protein kinase signaling

by Martin, Elizabeth C., Krebs, Adrienne E., Burks, Hope E., Elliott, Steven, Baddoo, Melody, Collins-Burow, Bridgette M., Flemington, Erik K., Burow, Matthew E.
Published 2014

Microbial Contamination in Next Generation Sequencing: Implications for Sequence-Based Analysis of Clinical Samples

by Strong, Michael J., Xu, Guorong, Morici, Lisa, Splinter Bon-Durant, Sandra, Baddoo, Melody, Lin, Zhen, Fewell, Claire, Taylor, Christopher M., Flemington, Erik K.
Published 2014

A comprehensive next generation sequencing-based virome assessment in brain tissue suggests no major virus - tumor association

by Strong, Michael J., Blanchard, Eugene, Lin, Zhen, Morris, Cindy A., Baddoo, Melody, Taylor, Christopher M., Ware, Marcus L., Flemington, Erik K.
Published 2016

Nerve growth factor receptor negates the tumor suppressor p53 as a feedback regulator

by Zhou, Xiang, Hao, Qian, Liao, Peng, Luo, Shiwen, Zhang, Minhong, Hu, Guohui, Liu, Hongbing, Zhang, Yiwei, Cao, Bo, Baddoo, Melody, Flemington, Erik K, Zeng, Shelya X, Lu, Hua
Published 2016

Effects of the Endocrine-Disrupting Chemical DDT on Self-Renewal and Differentiation of Human Mesenchymal Stem Cells

by Strong, Amy L., Shi, Zhenzhen, Strong, Michael J., Miller, David F.B., Rusch, Douglas B., Buechlein, Aaron M., Flemington, Erik K., McLachlan, John A., Nephew, Kenneth P., Burow, Matthew E., Bunnell, Bruce A.
Published 2014

Differences in Gastric Carcinoma Microenvironment Stratify According to EBV Infection Intensity: Implications for Possible Immune Adjuvant Therapy

by Strong, Michael J., Xu, Guorong, Coco, Joseph, Baribault, Carl, Vinay, Dass S., Lacey, Michelle R., Strong, Amy L., Lehman, Teresa A., Seddon, Michael B., Lin, Zhen, Concha, Monica, Baddoo, Melody, Ferris, MaryBeth, Swan, Kenneth F., Sullivan, Deborah E., Burow, Matthew E., Taylor, Christopher M., Flemington, Erik K.
Published 2013