Mammalian MicroRNA Prediction through a Support Vector Machine Model of Sequence and Structure

by Sheng, Ying, Engström, Pär G., Lenhard, Boris
Published 2007

RNAdb 2.0—an expanded database of mammalian non-coding RNAs

by Pang, Ken C., Stephen, Stuart, Dinger, Marcel E., Engström, Pär G., Lenhard, Boris, Mattick, John S.
Published 2007

Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival

by Engström, Pär G, Tommei, Diva, Stricker, Stefan H, Ender, Christine, Pollard, Steven M, Bertone, Paul
Published 2012

Identification of functional SNPs in the 5-prime flanking sequences of human genes

by Mottagui-Tabar, Salim, Faghihi, Mohammad A, Mizuno, Yosuke, Engström, Pär G, Lenhard, Boris, Wasserman, Wyeth W, Wahlestedt, Claes
Published 2005

In Silico Detection of Sequence Variations Modifying Transcriptional Regulation

by Andersen, Malin C, Engström, Pär G, Lithwick, Stuart, Arenillas, David, Eriksson, Per, Lenhard, Boris, Wasserman, Wyeth W, Odeberg, Jacob
Published 2008

Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes

by Sandelin, Albin, Bailey, Peter, Bruce, Sara, Engström, Pär G, Klos, Joanna M, Wasserman, Wyeth W, Ericson, Johan, Lenhard, Boris
Published 2004

Assessment of transcript reconstruction methods for RNA-seq

by Steijger, Tamara, Abril, Josep F, Engström, Pär G, Kokocinski, Felix, Hubbard, Tim J, Guigó, Roderic, Harrow, Jennifer, Bertone, Paul
Published 2013

The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells

by Castelo-Branco, Gonçalo, Amaral, Paulo P, Engström, Pär G, Robson, Samuel C, Marques, Sueli C, Bertone, Paul, Kouzarides, Tony
Published 2013

RNAdb—a comprehensive mammalian noncoding RNA database

by Pang, Ken C., Stephen, Stuart, Engström, Pär G., Tajul-Arifin, Khairina, Chen, Weisan, Wahlestedt, Claes, Lenhard, Boris, Hayashizaki, Yoshihide, Mattick, John S.
Published 2005

Systematic evaluation of spliced alignment programs for RNA-seq data

by Engström, Pär G, Steijger, Tamara, Sipos, Botond, Grant, Gregory R, Kahles, André, Rätsch, Gunnar, Goldman, Nick, Hubbard, Tim J, Harrow, Jennifer, Guigó, Roderic, Bertone, Paul
Published 2013

Complex Loci in Human and Mouse Genomes

by Engström, Pär G, Suzuki, Harukazu, Ninomiya, Noriko, Akalin, Altuna, Sessa, Luca, Lavorgna, Giovanni, Brozzi, Alessandro, Luzi, Lucilla, Tan, Sin Lam, Yang, Liang, Kunarso, Galih, Ng, Edwin Lian-Chong, Batalov, Serge, Wahlestedt, Claes, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Wells, Christine, Bajic, Vladimir B, Orlando, Valerio, Reid, James F, Lenhard, Boris, Lipovich, Leonard
Published 2006

A High-Content Small Molecule Screen Identifies Sensitivity of Glioblastoma Stem Cells to Inhibition of Polo-Like Kinase 1

by Danovi, Davide, Folarin, Amos, Gogolok, Sabine, Ender, Christine, Elbatsh, Ahmed M. O., Engström, Pär G., Stricker, Stefan H., Gagrica, Sladjana, Georgian, Ana, Yu, Ding, U, Kin Pong, Harvey, Kevin J., Ferretti, Patrizia, Paddison, Patrick J., Preston, Jane E., Abbott, N. Joan, Bertone, Paul, Smith, Austin, Pollard, Steven M.
Published 2013

Transcript Annotation in FANTOM3: Mouse Gene Catalog Based on Physical cDNAs

by Maeda, Norihiro, Kasukawa, Takeya, Oyama, Rieko, Gough, Julian, Frith, Martin, Engström, Pär G, Lenhard, Boris, Aturaliya, Rajith N, Batalov, Serge, Beisel, Kirk W, Bult, Carol J, Fletcher, Colin F, Forrest, Alistair R. R, Furuno, Masaaki, Hill, David, Itoh, Masayoshi, Kanamori-Katayama, Mutsumi, Katayama, Shintaro, Katoh, Masaru, Kawashima, Tsugumi, Quackenbush, John, Ravasi, Timothy, Ring, Brian Z, Shibata, Kazuhiro, Sugiura, Koji, Takenaka, Yoichi, Teasdale, Rohan D, Wells, Christine A, Zhu, Yunxia, Kai, Chikatoshi, Kawai, Jun, Hume, David A, Carninci, Piero, Hayashizaki, Yoshihide
Published 2006