Expanding the catalog of cas genes with metagenomes

by Zhang, Quan, Doak, Thomas G., Ye, Yuzhen
Published 2014

Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes

by Wang, Mingjie, Doak, Thomas G., Ye, Yuzhen
Published 2015

Telomere formation on macronuclear chromosomes of Oxytricha trifallax and O. fallax: alternatively processed regions have multiple telomere addition sites

by Williams, Kevin R, Doak, Thomas G, Herrick, Glenn
Published 2002

Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics

by Wu, Yu-Wei, Rho, Mina, Doak, Thomas G., Ye, Yuzhen
Published 2012

The gain and loss of chromosomal integron systems in the Treponema species

by Wu, Yu-Wei, Doak, Thomas G, Ye, Yuzhen
Published 2013

Strand-specific community RNA-seq reveals prevalent and dynamic antisense transcription in human gut microbiota

by Bao, Guanhui, Wang, Mingjie, Doak, Thomas G., Ye, Yuzhen
Published 2015

Genomic and Metagenomic Analysis of Diversity-Generating Retroelements Associated with Treponema denticola

by Nimkulrat, Sutichot, Lee, Heewook, Doak, Thomas G., Ye, Yuzhen
Published 2016

Bats Use Magnetite to Detect the Earth's Magnetic Field

by Holland, Richard A., Kirschvink, Joseph L., Doak, Thomas G., Wikelski, Martin
Published 2008

Diverse CRISPRs Evolving in Human Microbiomes

by Rho, Mina, Wu, Yu-Wei, Tang, Haixu, Doak, Thomas G., Ye, Yuzhen
Published 2012

A Genomic Survey of Reb Homologs Suggests Widespread Occurrence of R-Bodies in Proteobacteria

by Raymann, Kasie, Bobay, Louis-Marie, Doak, Thomas G., Lynch, Michael, Gribaldo, Simonetta
Published 2013

Spliced DNA Sequences in the Paramecium Germline: Their Properties and Evolutionary Potential

by Catania, Francesco, McGrath, Casey L., Doak, Thomas G., Lynch, Michael
Published 2013

CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes

by Zhang, Quan, Rho, Mina, Tang, Haixu, Doak, Thomas G, Ye, Yuzhen
Published 2013

Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli

by Lee, Heewook, Doak, Thomas G., Popodi, Ellen, Foster, Patricia L., Tang, Haixu
Published 2016

Mutation Rate, Spectrum, Topology, and Context-Dependency in the DNA Mismatch Repair-Deficient Pseudomonas fluorescens ATCC948

by Long, Hongan, Sung, Way, Miller, Samuel F., Ackerman, Matthew S., Doak, Thomas G., Lynch, Michael
Published 2014

The Rate and Spectrum of Spontaneous Mutations in Mycobacterium smegmatis, a Bacterium Naturally Devoid of the Postreplicative Mismatch Repair Pathway

by Kucukyildirim, Sibel, Long, Hongan, Sung, Way, Miller, Samuel F., Doak, Thomas G., Lynch, Michael
Published 2016

Disentangling the Taxonomy of Rickettsiales and Description of Two Novel Symbionts (“Candidatus Bealeia paramacronuclearis” and “Candidatus Fokinia cryptica”) Sharing the Cytoplasm...

by Szokoli, Franziska, Castelli, Michele, Sabaneyeva, Elena, Schrallhammer, Martina, Krenek, Sascha, Doak, Thomas G., Berendonk, Thomas U., Petroni, Giulio
Published 2016

Draft Genome Sequence of Caedibacter varicaedens, a Kappa Killer Endosymbiont Bacterium of the Ciliate Paramecium biaurelia

by Suzuki, Haruo, Dapper, Amy L., Jackson, Craig E., Lee, Heewook, Pejaver, Vikas, Doak, Thomas G., Lynch, Michael, Preer, John R.
Published 2015

The Oxytricha trifallax Mitochondrial Genome

by Swart, Estienne C., Nowacki, Mariusz, Shum, Justine, Stiles, Heather, Higgins, Brian P., Doak, Thomas G., Schotanus, Klaas, Magrini, Vincent J., Minx, Patrick, Mardis, Elaine R., Landweber, Laura F.
Published 2012

The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes

by Swart, Estienne C., Bracht, John R., Magrini, Vincent, Minx, Patrick, Chen, Xiao, Zhou, Yi, Khurana, Jaspreet S., Goldman, Aaron D., Nowacki, Mariusz, Schotanus, Klaas, Jung, Seolkyoung, Fulton, Robert S., Ly, Amy, McGrath, Sean, Haub, Kevin, Wiggins, Jessica L., Storton, Donna, Matese, John C., Parsons, Lance, Chang, Wei-Jen, Bowen, Michael S., Stover, Nicholas A., Jones, Thomas A., Eddy, Sean R., Herrick, Glenn A., Doak, Thomas G., Wilson, Richard K., Mardis, Elaine R., Landweber, Laura F.
Published 2013