1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

by Cox, Juergen, Mann, Matthias
Published 2012

Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins*

by Geiger, Tamar, Wehner, Anja, Schaab, Christoph, Cox, Juergen, Mann, Matthias
Published 2012

Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database*

by Schaab, Christoph, Geiger, Tamar, Stoehr, Gabriele, Cox, Juergen, Mann, Matthias
Published 2012

Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation*

by Thakur, Suman S., Geiger, Tamar, Chatterjee, Bhaswati, Bandilla, Peter, Fröhlich, Florian, Cox, Juergen, Mann, Matthias
Published 2011

Visualization of LC‐MS/MS proteomics data in MaxQuant

by Tyanova, Stefka, Temu, Tikira, Carlson, Arthur, Sinitcyn, Pavel, Mann, Matthias, Cox, Juergen
Published 2015

Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles

by Deeb, Sally J., Tyanova, Stefka, Hummel, Michael, Schmidt-Supprian, Marc, Cox, Juergen, Mann, Matthias
Published 2015

Proteomic maps of breast cancer subtypes

by Tyanova, Stefka, Albrechtsen, Reidar, Kronqvist, Pauliina, Cox, Juergen, Mann, Matthias, Geiger, Tamar
Published 2016

Deep proteome and transcriptome mapping of a human cancer cell line

by Nagaraj, Nagarjuna, Wisniewski, Jacek R, Geiger, Tamar, Cox, Juergen, Kircher, Martin, Kelso, Janet, Pääbo, Svante, Mann, Matthias
Published 2011

System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap*

by Nagaraj, Nagarjuna, Alexander Kulak, Nils, Cox, Juergen, Neuhauser, Nadin, Mayr, Korbinian, Hoerning, Ole, Vorm, Ole, Mann, Matthias
Published 2012

Initial Quantitative Proteomic Map of 28 Mouse Tissues Using the SILAC Mouse*

by Geiger, Tamar, Velic, Ana, Macek, Boris, Lundberg, Emma, Kampf, Caroline, Nagaraj, Nagarjuna, Uhlen, Mathias, Cox, Juergen, Mann, Matthias
Published 2013

Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome

by Grassl, Niklas, Kulak, Nils Alexander, Pichler, Garwin, Geyer, Philipp Emanuel, Jung, Jette, Schubert, Sören, Sinitcyn, Pavel, Cox, Juergen, Mann, Matthias
Published 2016

Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer*

by Michalski, Annette, Damoc, Eugen, Hauschild, Jan-Peter, Lange, Oliver, Wieghaus, Andreas, Makarov, Alexander, Nagaraj, Nagarjuna, Cox, Juergen, Mann, Matthias, Horning, Stevan
Published 2011

The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics*

by Beck, Scarlet, Michalski, Annette, Raether, Oliver, Lubeck, Markus, Kaspar, Stephanie, Goedecke, Niels, Baessmann, Carsten, Hornburg, Daniel, Meier, Florian, Paron, Igor, Kulak, Nils A., Cox, Juergen, Mann, Matthias
Published 2015

Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes*

by Michalski, Annette, Damoc, Eugen, Lange, Oliver, Denisov, Eduard, Nolting, Dirk, Müller, Mathias, Viner, Rosa, Schwartz, Jae, Remes, Philip, Belford, Michael, Dunyach, Jean-Jacques, Cox, Juergen, Horning, Stevan, Mann, Matthias, Makarov, Alexander
Published 2012