A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data

by Feng, Hao, Conneely, Karen N., Wu, Hao
Published 2014

Genome-wide analysis validates aberrant methylation in fragile X syndrome is specific to the FMR1 locus

by Alisch, Reid S, Wang, Tao, Chopra, Pankaj, Visootsak, Jeannie, Conneely, Karen N, Warren, Stephen T
Published 2013

Tandem Repeats and G-Rich Sequences Are Enriched at Human CNV Breakpoints

by Bose, Promita, Hermetz, Karen E., Conneely, Karen N., Rudd, M. Katharine
Published 2014

Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates

by Wu, Hao, Xu, Tianlei, Feng, Hao, Chen, Li, Li, Ben, Yao, Bing, Qin, Zhaohui, Jin, Peng, Conneely, Karen N.
Published 2015

Large Inverted Duplications in the Human Genome Form via a Fold-Back Mechanism

by Hermetz, Karen E., Newman, Scott, Conneely, Karen N., Martin, Christa L., Ballif, Blake C., Shaffer, Lisa G., Cody, Jannine D., Rudd, M. Katharine
Published 2014

Methylation quantitative trait loci (meQTLs) are consistently detected across ancestry, developmental stage, and tissue type

by Smith, Alicia K, Kilaru, Varun, Kocak, Mehmet, Almli, Lynn M, Mercer, Kristina B, Ressler, Kerry J, Tylavsky, Frances A, Conneely, Karen N
Published 2014

Fetal DNA Methylation Associates with Early Spontaneous Preterm Birth and Gestational Age

by Parets, Sasha E., Conneely, Karen N., Kilaru, Varun, Fortunato, Stephen J., Syed, Tariq Ali, Saade, George, Smith, Alicia K., Menon, Ramkumar
Published 2013

Dissecting Vancomycin-Intermediate Resistance in Staphylococcus aureus Using Genome-Wide Association

by Alam, Md Tauqeer, Petit, Robert A., Crispell, Emily K., Thornton, Timothy A., Conneely, Karen N., Jiang, Yunxuan, Satola, Sarah W., Read, Timothy D.
Published 2014

Autosomal Dominant Retinal Dystrophies Caused by a Founder Splice Site Mutation, c.828+3A>T, in PRPH2 and Protein Haplotypes in trans as Modifiers

by Shankar, Suma P., Hughbanks-Wheaton, Dianna K., Birch, David G., Sullivan, Lori S., Conneely, Karen N., Bowne, Sara J., Stone, Edwin M., Daiger, Stephen P.
Published 2016

Meta-analysis confirms association between TNFA-G238A variant and JIA, and between PTPN22-C1858T variant and oligoarticular, RF-polyarticular and RF-positive polyarticular JIA

by Kaalla, Merlyn J, Broadaway, K Alaine, Rohani-Pichavant, Mina, Conneely, Karen N, Whiting, April, Ponder, Lori, Okou, David T, Angeles-Han, Sheila, Rouster-Stevens, Kelly, Brown, Milton R, Vogler, Larry B, Jorde, Lynn B, Bohnsack, John F, Epstein, Michael P, Prahalad, Sampath
Published 2013

Drug Metabolizing Enzyme and Transporter Gene Variation, Nicotine Metabolism, Prospective Abstinence, and Cigarette Consumption

by Bergen, Andrew W., Michel, Martha, Nishita, Denise, Krasnow, Ruth, Javitz, Harold S., Conneely, Karen N., Lessov-Schlaggar, Christina N., Hops, Hyman, Zhu, Andy Z. X., Baurley, James W., McClure, Jennifer B., Hall, Sharon M., Baker, Timothy B., Conti, David V., Benowitz, Neal L., Lerman, Caryn, Tyndale, Rachel F., Swan, Gary E.
Published 2015

An epigenetic clock for gestational age at birth based on blood methylation data

by Knight, Anna K., Craig, Jeffrey M., Theda, Christiane, Bækvad-Hansen, Marie, Bybjerg-Grauholm, Jonas, Hansen, Christine S., Hollegaard, Mads V., Hougaard, David M., Mortensen, Preben B., Weinsheimer, Shantel M., Werge, Thomas M., Brennan, Patricia A., Cubells, Joseph F., Newport, D. Jeffrey, Stowe, Zachary N., Cheong, Jeanie L. Y., Dalach, Philippa, Doyle, Lex W., Loke, Yuk J., Baccarelli, Andrea A., Just, Allan C., Wright, Robert O., Téllez-Rojo, Mara M., Svensson, Katherine, Trevisi, Letizia, Kennedy, Elizabeth M., Binder, Elisabeth B., Iurato, Stella, Czamara, Darina, Räikkönen, Katri, Lahti, Jari M. T., Pesonen, Anu-Katriina, Kajantie, Eero, Villa, Pia M., Laivuori, Hannele, Hämäläinen, Esa, Park, Hea Jin, Bailey, Lynn B., Parets, Sasha E., Kilaru, Varun, Menon, Ramkumar, Horvath, Steve, Bush, Nicole R., LeWinn, Kaja Z., Tylavsky, Frances A., Conneely, Karen N., Smith, Alicia K.
Published 2016

DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases

by Ligthart, Symen, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael M., Conneely, Karen N., Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay L., Joehanes, Roby, Guan, Weihua, Brody, Jennifer A., Elks, Cathy, Marioni, Riccardo, Jhun, Min A., Agha, Golareh, Bressler, Jan, Ward-Caviness, Cavin K., Chen, Brian H., Huan, Tianxiao, Bakulski, Kelly, Salfati, Elias L., Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena G., Just, Allan C., Smith, Jennifer A., Sotoodehnia, Nona, Pilling, Luke C., Pankow, James S., Tsao, Phil S., Liu, Chunyu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki J., Smith, Alicia K., Peters, Marjolein J., Melzer, David, Vokonas, Pantel, Fornage, Myriam, Prokisch, Holger, Bis, Joshua C., Chu, Audrey Y., Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan F., Lin, Honghuang, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas J., Wiggins, Kerri L., Feinberg, Andrew P., Starr, John M., Visscher, Peter M., Murabito, Joanne M., Kardia, Sharon L. R., Absher, Devin M., Binder, Elisabeth B., Singleton, Andrew B., Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel D., Demerath, Ellen W., Uitterlinden, André G., van Meurs, Joyce B. J., Franco, Oscar H., Chen, Yii-Der Ida, Levy, Daniel, Turner, Stephen T., Deary, Ian J., Ressler, Kerry J., Dupuis, Josée, Ferrucci, Luigi, Ong, Ken K., Assimes, Themistocles L., Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna K., Baccarelli, Andrea A., Benjamin, Emelia J., Dehghan, Abbas
Published 2016

The transcriptional landscape of age in human peripheral blood

by Peters, Marjolein J., Joehanes, Roby, Pilling, Luke C., Schurmann, Claudia, Conneely, Karen N., Powell, Joseph, Reinmaa, Eva, Sutphin, George L., Zhernakova, Alexandra, Schramm, Katharina, Wilson, Yana A., Kobes, Sayuko, Tukiainen, Taru, Ramos, Yolande F., Göring, Harald H. H., Fornage, Myriam, Liu, Yongmei, Gharib, Sina A., Stranger, Barbara E., De Jager, Philip L., Aviv, Abraham, Levy, Daniel, Murabito, Joanne M., Munson, Peter J., Huan, Tianxiao, Hofman, Albert, Uitterlinden, André G., Rivadeneira, Fernando, van Rooij, Jeroen, Stolk, Lisette, Broer, Linda, Verbiest, Michael M. P. J., Jhamai, Mila, Arp, Pascal, Metspalu, Andres, Tserel, Liina, Milani, Lili, Samani, Nilesh J., Peterson, Pärt, Kasela, Silva, Codd, Veryan, Peters, Annette, Ward-Caviness, Cavin K., Herder, Christian, Waldenberger, Melanie, Roden, Michael, Singmann, Paula, Zeilinger, Sonja, Illig, Thomas, Homuth, Georg, Grabe, Hans-Jörgen, Völzke, Henry, Steil, Leif, Kocher, Thomas, Murray, Anna, Melzer, David, Yaghootkar, Hanieh, Bandinelli, Stefania, Moses, Eric K., Kent, Jack W., Curran, Joanne E., Johnson, Matthew P., Williams-Blangero, Sarah, Westra, Harm-Jan, McRae, Allan F., Smith, Jennifer A., Kardia, Sharon L. R., Hovatta, Iiris, Perola, Markus, Ripatti, Samuli, Salomaa, Veikko, Henders, Anjali K., Martin, Nicholas G., Smith, Alicia K., Mehta, Divya, Binder, Elisabeth B., Nylocks, K Maria, Kennedy, Elizabeth M., Klengel, Torsten, Ding, Jingzhong, Suchy-Dicey, Astrid M., Enquobahrie, Daniel A., Brody, Jennifer, Rotter, Jerome I., Chen, Yii-Der I., Houwing-Duistermaat, Jeanine, Kloppenburg, Margreet, Slagboom, P. Eline, Helmer, Quinta, den Hollander, Wouter, Bean, Shannon, Raj, Towfique, Bakhshi, Noman, Wang, Qiao Ping, Oyston, Lisa J., Psaty, Bruce M., Tracy, Russell P., Montgomery, Grant W., Turner, Stephen T., Blangero, John, Meulenbelt, Ingrid, Ressler, Kerry J., Yang, Jian, Franke, Lude, Kettunen, Johannes, Visscher, Peter M., Neely, G. Gregory, Korstanje, Ron, Hanson, Robert L., Prokisch, Holger, Ferrucci, Luigi, Esko, Tonu, Teumer, Alexander, van Meurs, Joyce B. J., Johnson, Andrew D.
Published 2015