Transcriptional Profiling of MEq-Dependent Genes in Marek’s Disease Resistant and Susceptible Inbred Chicken Lines

by Subramaniam, Sugalesini, Preeyanon, Likit, Cheng, Hans H.
Published 2013

Genome-Wide Identification and Quantification of cis- and trans-Regulated Genes Responding to Marek’s Disease Virus Infection via Analysis of Allele-Specific Expression

by MacEachern, Sean, Muir, William M., Crosby, Seth D., Cheng, Hans H.
Published 2012

Chromosomal integration of an avian oncogenic herpesvirus reveals telomeric preferences and evidence for lymphoma clonality

by Robinson, Charmaine M, Hunt, Henry D, Cheng, Hans H, Delany, Mary E
Published 2010

Down-regulation of promoter methylation level of CD4 gene after MDV infection in MD-susceptible chicken line

by Luo, Juan, Yu, Ying, Zhang, Huanmin, Tian, Fei, Chang, Shuang, Cheng, Hans H, Song, Jiuzhou
Published 2011

Genome-wide identification of allele-specific expression (ASE) in response to Marek’s disease virus infection using next generation sequencing

by MacEachern, Sean, Muir, William M, Crosby, Seth, Cheng, Hans H
Published 2011

Comparison and contrast of genes and biological pathways responding to Marek’s disease virus infection using allele-specific expression and differential expression in broiler and l...

by Perumbakkam, Sudeep, Muir, William M, Black-Pyrkosz, Alexis, Okimoto, Ron, Cheng, Hans H
Published 2013

Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek’s disease

by Yan, Yiyuan, Yang, Ning, Cheng, Hans H., Song, Jiuzhou, Qu, Lujiang
Published 2015

Fine mapping of QTL and genomic prediction using allele-specific expression SNPs demonstrates that the complex trait of genetic resistance to Marek’s disease is predominantly deter...

by Cheng, Hans H., Perumbakkam, Sudeep, Pyrkosz, Alexis Black, Dunn, John R., Legarra, Andres, Muir, William M.
Published 2015

Large scale variation in DNA copy number in chicken breeds

by Crooijmans, Richard PMA, Fife, Mark S, Fitzgerald, Tomas W, Strickland, Shurnevia, Cheng, Hans H, Kaiser, Pete, Redon, Richard, Groenen, Martien AM
Published 2013

Transcriptional Profiles of Host-Pathogen Responses to Necrotic Enteritis and Differential Regulation of Immune Genes in Two Inbreed Chicken Lines Showing Disparate Disease Suscept...

by Kim, Duk Kyung, Lillehoj, Hyun S., Jang, Seung I., Lee, Sung Hyen, Hong, Yeong Ho, Cheng, Hans H.
Published 2014

The development and characterization of a 60K SNP chip for chicken

by Groenen, Martien AM, Megens, Hendrik-Jan, Zare, Yalda, Warren, Wesley C, Hillier, LaDeana W, Crooijmans, Richard PMA, Vereijken, Addie, Okimoto, Ron, Muir, William M, Cheng, Hans H
Published 2011

Nuclear Factor kappa B is central to Marek’s Disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo

by Kumar, Shyamesh, Kunec, Dusan, Buza, Joram J, Chiang, Hsin-I, Zhou, Huaijun, Subramaniam, Sugalesini, Pendarvis, Ken, Cheng, Hans H, Burgess, Shane C
Published 2012

The cellular and molecular etiology of the craniofacial defects in the avian ciliopathic mutant talpid2

by Chang, Ching-Fang, Schock, Elizabeth N., O'Hare, Elizabeth A., Dodgson, Jerry, Cheng, Hans H., Muir, William M., Edelmann, Richard E., Delany, Mary E., Brugmann, Samantha A.
Published 2014

Mapping and genotypic analysis of the NK-lysin gene in chicken

by Lee, Mi Ok, Yang, Ence, Morisson, Mireille, Vignal, Alain, Huang, Yong-Zhen, Cheng, Hans H, Muir, William M, Lamont, Susan J, Lillehoj, Hyun Soon, Lee, Sung Hyen, Womack, James E
Published 2014

GO‐FAANG meeting: a Gathering On Functional Annotation of Animal Genomes

by Tuggle, Christopher K., Giuffra, Elisabetta, White, Stephen N., Clarke, Laura, Zhou, Huaijun, Ross, Pablo J., Acloque, Hervé, Reecy, James M., Archibald, Alan, Bellone, Rebecca R., Boichard, Michèle, Chamberlain, Amanda, Cheng, Hans, Crooijmans, Richard P.M.A., Delany, Mary E., Finno, Carrie J., Groenen, Martien A. M., Hayes, Ben, Lunney, Joan K., Petersen, Jessica L., Plastow, Graham S., Schmidt, Carl J., Song, Jiuzhou, Watson, Mick
Published 2016

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

by Andersson, Leif, Archibald, Alan L, Bottema, Cynthia D, Brauning, Rudiger, Burgess, Shane C, Burt, Dave W, Casas, Eduardo, Cheng, Hans H, Clarke, Laura, Couldrey, Christine, Dalrymple, Brian P, Elsik, Christine G, Foissac, Sylvain, Giuffra, Elisabetta, Groenen, Martien A, Hayes, Ben J, Huang, LuSheng S, Khatib, Hassan, Kijas, James W, Kim, Heebal, Lunney, Joan K, McCarthy, Fiona M, McEwan, John C, Moore, Stephen, Nanduri, Bindu, Notredame, Cedric, Palti, Yniv, Plastow, Graham S, Reecy, James M, Rohrer, Gary A, Sarropoulou, Elena, Schmidt, Carl J, Silverstein, Jeffrey, Tellam, Ross L, Tixier-Boichard, Michele, Tosser-Klopp, Gwenola, Tuggle, Christopher K, Vilkki, Johanna, White, Stephen N, Zhao, Shuhong, Zhou, Huaijun
Published 2015