Modeling gene expression control using Omes Law

by Bussemaker, Harmen J
Published 2006

TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors

by Foat, Barrett C., Tepper, Ronald G., Bussemaker, Harmen J.
Published 2008

Dissecting complex transcriptional responses using pathway-level scores based on prior information

by Bussemaker, Harmen J, Ward, Lucas D, Boorsma, Andre
Published 2007

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data

by Gao, Feng, Foat, Barrett C, Bussemaker, Harmen J
Published 2004

DAF-16 and PQM-1: Partners in longevity

by Tepper, Ronald G., Murphy, Coleen T., Bussemaker, Harmen J.
Published 2014

DSSR: an integrated software tool for dissecting the spatial structure of RNA

by Lu, Xiang-Jun, Bussemaker, Harmen J., Olson, Wilma K.
Published 2015

Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE

by Riley, Todd R, Lazarovici, Allan, Mann, Richard S, Bussemaker, Harmen J
Published 2015

Characterizing a collective and dynamic component of chromatin immunoprecipitation enrichment profiles in yeast

by Ward, Lucas D, Wang, Junbai, Bussemaker, Harmen J
Published 2014

T-profiler: scoring the activity of predefined groups of genes using gene expression data

by Boorsma, André, Foat, Barrett C., Vis, Daniel, Klis, Frans, Bussemaker, Harmen J.
Published 2005

Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway

by McIsaac, R. Scott, Petti, Allegra A., Bussemaker, Harmen J., Botstein, David
Published 2012

Combinatorial control of diverse metabolic and physiological functions by transcriptional regulators of the yeast sulfur assimilation pathway

by Petti, Allegra A., McIsaac, R. Scott, Ho-Shing, Olivia, Bussemaker, Harmen J., Botstein, David
Published 2012

Detecting transcriptionally active regions using genomic tiling arrays

by Halasz, Gabor, van Batenburg, Marinus F, Perusse, Joelle, Hua, Sujun, Lu, Xiang-Jun, White, Kevin P, Bussemaker, Harmen J
Published 2006

Hap4p overexpression in glucose-grown Saccharomyces cerevisiae induces cells to enter a novel metabolic state

by Lascaris, Romeo, Bussemaker, Harmen J, Boorsma, André, Piper, Matt, van der Spek, Hans, Grivell, Les, Blom, Jolanda
Published 2003

Evolving insights on how cytosine methylation affects protein–DNA binding

by Dantas Machado, Ana Carolina, Zhou, Tianyin, Rao, Satyanarayan, Goel, Pragya, Rastogi, Chaitanya, Lazarovici, Allan, Bussemaker, Harmen J., Rohs, Remo
Published 2015

Harnessing Natural Sequence Variation to Dissect Posttranscriptional Regulatory Networks in Yeast

by Fazlollahi, Mina, Lee, Eunjee, Muroff, Ivor, Lu, Xiang-Jun, Gomez-Alcala, Pilar, Causton, Helen C., Bussemaker, Harmen J.
Published 2014

ETO family protein Mtg16 regulates the balance of dendritic cell subsets by repressing Id2

by Ghosh, Hiyaa S., Ceribelli, Michele, Matos, Ines, Lazarovici, Allan, Bussemaker, Harmen J., Lasorella, Anna, Hiebert, Scott W., Liu, Kang, Staudt, Louis M., Reizis, Boris
Published 2014