FindPeaks 3.1: A tool for identifying areas of enrichment from massively parallel short-read sequencing technology

by Fejes, A., Robertson, G., Bilenky, M., Varhol, Richard, Bainbridge, M., Jones, S.
Published 2008

Identification of a set of genes showing regionally enriched expression in the mouse brain

by D'Souza, C., Chopra, V., Varhol, Richard, Xie, Y., Bohacec, S., Zhao, Y., Lee, L., Bilenky, M., Portales-Casamar, E., He, A., Wasserman, W., Goldowitz, D., Marra, M., Holt, R., Simpson, E., Jones, S.
Published 2008

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

by Wederell, E., Bilenky, M., Cullum, R., Thiessen, N., Dagpinar, M., Delaney, A., Varhol, Richard, Zhao, Y., Zeng, T., Bernier, B., Ingham, M., Hirst, M., Robertson, G., Marra, M., Jones, S., Hoodless, P.
Published 2008

Conserved role of intragenic DNA methylation in regulating alternative promoters

by Maunakea, A., Nagarajan, R., Bilenky, M., Ballinger, T., Dsouza, C., Fouse, S., Johnson, B., Hong, C., Nielsen, C., Zhao, Y., Turecki, G., Delaney, A., Varhol, Richard, Thiessen, N., Shchors, K., Heine, V., Rowitch, D., Xing, X., Fiore, C., Schillebeeckx, M., Jones, S., Haussler, D., Marra, M., Hirst, M., Wang, T., Costello, J.
Published 2010

cisRED: a database system for genome-scale computational discovery of regulatory elements

by Robertson, G., Bilenky, M., Lin, K., He, A., Yuen, W., Dagpinar, M., Varhol, R., Teague, K., Griffith, O. L., Zhang, X., Pan, Y., Hassel, M., Sleumer, M. C., Pan, W., Pleasance, E. D., Chuang, M., Hao, H., Li, Y. Y., Robertson, N., Fjell, C., Li, B., Montgomery, S. B., Astakhova, T., Zhou, J., Sander, J., Siddiqui, A. S., Jones, S. J. M.
Published 2006