G-Quadruplex structures are stable and detectable in human genomic DNA

by Lam, Enid Yi Ni, Beraldi, Dario, Tannahill, David, Balasubramanian, Shankar
Published 2013

Genome-wide mapping of FOXM1 binding reveals co-binding with estrogen receptor alpha in breast cancer cells

by Sanders, Deborah A, Ross-Innes, Caryn S, Beraldi, Dario, Carroll, Jason S, Balasubramanian, Shankar
Published 2013

FOXM1 binds directly to non-consensus sequences in the human genome

by Sanders, Deborah A., Gormally, Michael V., Marsico, Giovanni, Beraldi, Dario, Tannahill, David, Balasubramanian, Shankar
Published 2015

Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

by Robert, Christelle, Kapetanovic, Ronan, Beraldi, Dario, Watson, Mick, Archibald, Alan L., Hume, David A.
Published 2015

Accurate Measurement of 5-Methylcytosine and 5-Hydroxymethylcytosine in Human Cerebellum DNA by Oxidative Bisulfite on an Array (OxBS-Array)

by Field, Sarah F., Beraldi, Dario, Bachman, Martin, Stewart, Sabrina K., Beck, Stephan, Balasubramanian, Shankar
Published 2015

5-Formylcytosine alters the structure of the DNA double helix

by Raiber, Eun-Ang, Murat, Pierre, Chirgadze, Dimitri Y., Beraldi, Dario, Luisi, Ben F., Balasubramanian, Shankar
Published 2014

Enhanced Methylation Analysis by Recovery of Unsequenceable Fragments

by McInroy, Gordon R., Beraldi, Dario, Raiber, Eun-Ang, Modrzynska, Katarzyna, van Delft, Pieter, Billker, Oliver, Balasubramanian, Shankar
Published 2016

Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase

by Raiber, Eun-Ang, Beraldi, Dario, Ficz, Gabriella, Burgess, Heather E, Branco, Miguel R, Murat, Pierre, Oxley, David, Booth, Michael J, Reik, Wolf, Balasubramanian, Shankar
Published 2012

The impact of breed and tissue compartment on the response of pig macrophages to lipopolysaccharide

by Kapetanovic, Ronan, Fairbairn, Lynsey, Downing, Alison, Beraldi, Dario, Sester, David P, Freeman, Tom C, Tuggle, Christopher K, Archibald, Alan L, Hume, David A
Published 2013

In vivo genome-wide profiling reveals a tissue-specific role for 5-formylcytosine

by Iurlaro, Mario, McInroy, Gordon R., Burgess, Heather E., Dean, Wendy, Raiber, Eun-Ang, Bachman, Martin, Beraldi, Dario, Balasubramanian, Shankar, Reik, Wolf
Published 2016

Prediction of Altered 3′- UTR miRNA-Binding Sites from RNA-Seq Data: The Swine Leukocyte Antigen Complex (SLA) as a Model Region

by Endale Ahanda, Marie-Laure, Fritz, Eric R., Estellé, Jordi, Hu, Zhi-Liang, Madsen, Ole, Groenen, Martien A. M., Beraldi, Dario, Kapetanovic, Ronan, Hume, David A., Rowland, Robert R. R., Lunney, Joan K., Rogel-Gaillard, Claire, Reecy, James M., Giuffra, Elisabetta
Published 2012

A gene expression atlas of the domestic pig

by Freeman, Tom C, Ivens, Alasdair, Baillie, J Kenneth, Beraldi, Dario, Barnett, Mark W, Dorward, David, Downing, Alison, Fairbairn, Lynsey, Kapetanovic, Ronan, Raza, Sobia, Tomoiu, Andru, Alberio, Ramiro, Wu, Chunlei, Su, Andrew I, Summers, Kim M, Tuggle, Christopher K, Archibald, Alan L, Hume, David A
Published 2012

Structural and functional annotation of the porcine immunome

by Dawson, Harry D, Loveland, Jane E, Pascal, Géraldine, Gilbert, James GR, Uenishi, Hirohide, Mann, Katherine M, Sang, Yongming, Zhang, Jie, Carvalho-Silva, Denise, Hunt, Toby, Hardy, Matthew, Hu, Zhiliang, Zhao, Shu-Hong, Anselmo, Anna, Shinkai, Hiroki, Chen, Celine, Badaoui, Bouabid, Berman, Daniel, Amid, Clara, Kay, Mike, Lloyd, David, Snow, Catherine, Morozumi, Takeya, Cheng, Ryan Pei-Yen, Bystrom, Megan, Kapetanovic, Ronan, Schwartz, John C, Kataria, Ranjit, Astley, Matthew, Fritz, Eric, Steward, Charles, Thomas, Mark, Wilming, Laurens, Toki, Daisuke, Archibald, Alan L, Bed’Hom, Bertrand, Beraldi, Dario, Huang, Ting-Hua, Ait-Ali, Tahar, Blecha, Frank, Botti, Sara, Freeman, Tom C, Giuffra, Elisabetta, Hume, David A, Lunney, Joan K, Murtaugh, Michael P, Reecy, James M, Harrow, Jennifer L, Rogel-Gaillard, Claire, Tuggle, Christopher K
Published 2013