INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints

by Busch, Anke, Backofen, Rolf
Published 2007

Accessibility and conservation: General features of bacterial small RNA–mRNA interactions?

by Richter, Andreas S., Backofen, Rolf
Published 2012

Cluster based prediction of PDZ-peptide interactions

by Kundu, Kousik, Backofen, Rolf
Published 2014

Lightweight comparison of RNAs based on exact sequence–structure matches

by Heyne, Steffen, Will, Sebastian, Beckstette, Michael, Backofen, Rolf
Published 2009

A graph kernel approach for alignment-free domain–peptide interaction prediction with an application to human SH3 domains

by Kundu, Kousik, Costa, Fabrizio, Backofen, Rolf
Published 2013

antaRNA: ant colony-based RNA sequence design

by Kleinkauf, Robert, Mann, Martin, Backofen, Rolf
Published 2015

Structator: fast index-based search for RNA sequence-structure patterns

by Meyer, Fernando, Kurtz, Stefan, Backofen, Rolf, Will, Sebastian, Beckstette, Michael
Published 2011

Sparsification of RNA structure prediction including pseudoknots

by Möhl, Mathias, Salari, Raheleh, Will, Sebastian, Backofen, Rolf, Sahinalp, S Cenk
Published 2010

Non-EST based prediction of exon skipping and intron retention events using Pfam information

by Hiller, Michael, Huse, Klaus, Platzer, Matthias, Backofen, Rolf
Published 2005

Creation and disruption of protein features by alternative splicing - a novel mechanism to modulate function

by Hiller, Michael, Huse, Klaus, Platzer, Matthias, Backofen, Rolf
Published 2005

Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

by Hiller, Michael, Pudimat, Rainer, Busch, Anke, Backofen, Rolf
Published 2006

BioBayesNet: a web server for feature extraction and Bayesian network modeling of biological sequence data

by Nikolajewa, Swetlana, Pudimat, Rainer, Hiller, Michael, Platzer, Matthias, Backofen, Rolf
Published 2007

GraphClust: alignment-free structural clustering of local RNA secondary structures

by Heyne, Steffen, Costa, Fabrizio, Rose, Dominic, Backofen, Rolf
Published 2012

The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences

by Seemann, Stefan E., Menzel, Peter, Backofen, Rolf, Gorodkin, Jan
Published 2011

Pre-mRNA Secondary Structures Influence Exon Recognition

by Hiller, Michael, Zhang, Zhaiyi, Backofen, Rolf, Stamm, Stefan
Published 2007

Alternative Splicing at NAGNAG Acceptors: Simply Noise or Noise and More?

by Hiller, Michael, Szafranski, Karol, Backofen, Rolf, Platzer, Matthias
Published 2006

CARNA—alignment of RNA structure ensembles

by Sorescu, Dragoş Alexandru, Möhl, Mathias, Mann, Martin, Backofen, Rolf, Will, Sebastian
Published 2012

CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems

by Lange, Sita J., Alkhnbashi, Omer S., Rose, Dominic, Will, Sebastian, Backofen, Rolf
Published 2013

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles

by Videm, Pavankumar, Rose, Dominic, Costa, Fabrizio, Backofen, Rolf
Published 2014

Semi-Supervised Prediction of SH2-Peptide Interactions from Imbalanced High-Throughput Data

by Kundu, Kousik, Costa, Fabrizio, Huber, Michael, Reth, Michael, Backofen, Rolf
Published 2013