Expression of Polarity Genes in Human Cancer

by Lin, Wan-Hsin, Asmann, Yan W, Anastasiadis, Panos Z
Published 2015

c-Myc Regulates Self-Renewal in Bronchoalveolar Stem Cells

by Dong, Jie, Sutor, Shari, Jiang, Guoqian, Cao, Yajun, Asmann, Yan W., Wigle, Dennis A.
Published 2011

Differential Expression of MicroRNAs in Tumors from Chronically Inflamed or Genetic (APCMin/+) Models of Colon Cancer

by Necela, Brian M., Carr, Jennifer M., Asmann, Yan W., Thompson, E. Aubrey
Published 2011

Clinical Correlates of Autosomal Chromosomal Abnormalities in an Electronic Medical Record–Linked Genome-Wide Association Study: A Case Series

by Jouni, Hayan, Shameer, Khader, Asmann, Yan W., Hazin, Ribhi, de Andrade, Mariza, Kullo, Iftikhar J.
Published 2013

Chronically endurance‐trained individuals preserve skeletal muscle mitochondrial gene expression with age but differences within age groups remain

by Johnson, Matthew L., Lanza, Ian R., Short, Daniel K., Asmann, Yan W., Nair, K. Sreekumaran
Published 2014

Circulating Extracellular RNA Markers of Liver Regeneration

by Yan, Irene K., Wang, Xue, Asmann, Yan W., Haga, Hiroaki, Patel, Tushar
Published 2016

Comprehensive Assessment of Potential Multiple Myeloma Immunoglobulin Heavy Chain V-D-J Intraclonal Variation Using Massively Parallel Pyrosequencing

by Tschumper, Renee C., Asmann, Yan W., Hossain, Asif, Huddleston, Paul M., Wu, Xiaosheng, Dispenzieri, Angela, Eckloff, Bruce W., Jelinek, Diane F.
Published 2012

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing

by Sun, Zhifu, Baheti, Saurabh, Middha, Sumit, Kanwar, Rahul, Zhang, Yuji, Li, Xing, Beutler, Andreas S., Klee, Eric, Asmann, Yan W., Thompson, E. Aubrey, Kocher, Jean-Pierre A.
Published 2012

MicroRNA-mRNA interactions in a murine model of hyperoxia-induced bronchopulmonary dysplasia

by Dong, Jie, Carey, William A, Abel, Stuart, Collura, Christopher, Jiang, Guoqian, Tomaszek, Sandra, Sutor, Shari, Roden, Anja C, Asmann, Yan W, Prakash, Y S, Wigle, Dennis A
Published 2012

A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines

by Asmann, Yan W., Hossain, Asif, Necela, Brian M., Middha, Sumit, Kalari, Krishna R., Sun, Zhifu, Chai, High-Seng, Williamson, David W., Radisky, Derek, Schroth, Gary P., Kocher, Jean-Pierre A., Perez, Edith A., Thompson, E. Aubrey
Published 2011

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data

by Asmann, Yan W., Middha, Sumit, Hossain, Asif, Baheti, Saurabh, Li, Ying, Chai, High-Seng, Sun, Zhifu, Duffy, Patrick H., Hadad, Ahmed A., Nair, Asha, Liu, Xiaoyu, Zhang, Yuji, Klee, Eric W., Kalari, Krishna R., Kocher, Jean-Pierre A.
Published 2012

Concordance of Changes in Metabolic Pathways Based on Plasma Metabolomics and Skeletal Muscle Transcriptomics in Type 1 Diabetes

by Dutta, Tumpa, Chai, High Seng, Ward, Lawrence E., Ghosh, Aditya, Persson, Xuan-Mai T., Ford, G. Charles, Kudva, Yogish C., Sun, Zhifu, Asmann, Yan W., Kocher, Jean-Pierre A., Nair, K. Sreekumaran
Published 2012

Impact of Library Preparation on Downstream Analysis and Interpretation of RNA-Seq Data: Comparison between Illumina PolyA and NuGEN Ovation Protocol

by Sun, Zhifu, Asmann, Yan W., Nair, Asha, Zhang, Yuji, Wang, Liguo, Kalari, Krishna R., Bhagwate, Aditya V., Baker, Tiffany R., Carr, Jennifer M., Kocher, Jean-Pierre A., Perez, Edith A., Thompson, E. Aubrey
Published 2013

Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth

by Holst, Frederik, Hoivik, Erling A., Gibson, William J., Taylor-Weiner, Amaro, Schumacher, Steven E., Asmann, Yan W., Grossmann, Patrick, Trovik, Jone, Necela, Brian M., Thompson, E. Aubrey, Meyerson, Matthew, Beroukhim, Rameen, Salvesen, Helga B., Cherniack, Andrew D.
Published 2016

The relationship between quantitative human epidermal growth factor receptor 2 gene expression by the 21-gene reverse transcriptase polymerase chain reaction assay and adjuvant tra...

by Perez, Edith A., Baehner, Frederick L., Butler, Steven M., Thompson, E. Aubrey, Dueck, Amylou C., Jamshidian, Farid, Cherbavaz, Diana, Yoshizawa, Carl, Shak, Steven, Kaufman, Peter A., Davidson, Nancy E., Gralow, Julie, Asmann, Yan W., Ballman, Karla V.
Published 2015

RVboost: RNA-seq variants prioritization using a boosting method

by Wang, Chen, Davila, Jaime I., Baheti, Saurabh, Bhagwate, Aditya V., Wang, Xue, Kocher, Jean-Pierre A., Slager, Susan L., Feldman, Andrew L., Novak, Anne J., Cerhan, James R., Thompson, E. Aubrey, Asmann, Yan W.
Published 2014

Corrigendum: Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth

by Holst, Frederik, Hoivik, Erling A., Gibson, William J., Taylor-Weiner, Amaro, Schumacher, Steven E., Asmann, Yan W., Grossmann, Patrick, Trovik, Jone, Necela, Brian M., Thompson, E. Aubrey, Meyerson, Matthew, Beroukhim, Rameen, Salvesen, Helga B., Cherniack, Andrew D.
Published 2016

Meta-analysis of 8q24 for seven cancers reveals a locus between NOV and ENPP2 associated with cancer development

by Brisbin, Abra G, Asmann, Yan W, Song, Honglin, Tsai, Ya-Yu, Aakre, Jeremiah A, Yang, Ping, Jenkins, Robert B, Pharoah, Paul, Schumacher, Fredrick, Conti, David V, Duggan, David J, Jenkins, Mark, Hopper, John, Gallinger, Steven, Newcomb, Polly, Casey, Graham, Sellers, Thomas A, Fridley, Brooke L
Published 2011

Deep Sequence Analysis of Non-Small Cell Lung Cancer: Integrated Analysis of Gene Expression, Alternative Splicing, and Single Nucleotide Variations in Lung Adenocarcinomas with an...

by Kalari, Krishna R., Rossell, David, Necela, Brian M., Asmann, Yan W., Nair, Asha, Baheti, Saurabh, Kachergus, Jennifer M., Younkin, Curtis S., Baker, Tiffany, Carr, Jennifer M., Tang, Xiaojia, Walsh, Michael P., Chai, High-Seng, Sun, Zhifu, Hart, Steven N., Leontovich, Alexey A., Hossain, Asif, Kocher, Jean-Pierre, Perez, Edith A., Reisman, David N., Fields, Alan P., Thompson, E. Aubrey
Published 2012

Gene Expression, Single Nucleotide Variant and Fusion Transcript Discovery in Archival Material from Breast Tumors

by Norton, Nadine, Sun, Zhifu, Asmann, Yan W., Serie, Daniel J., Necela, Brian M., Bhagwate, Aditya, Jen, Jin, Eckloff, Bruce W., Kalari, Krishna R., Thompson, Kevin J., Carr, Jennifer M., Kachergus, Jennifer M., Geiger, Xochiquetzal J., Perez, Edith A., Thompson, E. Aubrey
Published 2013