Evolvable signaling networks of receptor tyrosine kinases: relevance of robustness to malignancy and to cancer therapy

by Amit, Ido, Wides, Ron, Yarden, Yosef
Published 2007

4sUDRB-seq: measuring genomewide transcriptional elongation rates and initiation frequencies within cells

by Fuchs, Gilad, Voichek, Yoav, Benjamin, Sima, Gilad, Shlomit, Amit, Ido, Oren, Moshe
Published 2014

Analysis of the transcriptional networks underpinning the activation of murine macrophages by inflammatory mediators

by Raza, Sobia, Barnett, Mark W., Barnett-Itzhaki, Zohar, Amit, Ido, Hume, David A., Freeman, Tom C.
Published 2014

Transcription factor binding dynamics during human ESC differentiation

by Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander
Published 2015

High-Resolution Chromatin Dynamics during a Yeast Stress Response

by Weiner, Assaf, Hsieh, Tsung-Han S., Appleboim, Alon, Chen, Hsiuyi V., Rahat, Ayelet, Amit, Ido, Rando, Oliver J., Friedman, Nir
Published 2015

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

by Rabani, Michal, Levin, Joshua Z, Fan, Lin, Adiconis, Xian, Raychowdhury, Raktima, Garber, Manuel, Gnirke, Andreas, Nusbaum, Chad, Hacohen, Nir, Friedman, Nir, Amit, Ido, Regev, Aviv
Published 2011

Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli

by Gat-Viks, Irit, Chevrier, Nicolas, Wilentzik, Roni, Eisenhaure, Thomas, Raychowdhury, Raktima, Steuerman, Yael, Shalek, Alex, Hacohen, Nir, Amit, Ido, Regev, Aviv
Published 2013

Digital cell quantification identifies global immune cell dynamics during influenza infection

by Altboum, Zeev, Steuerman, Yael, David, Eyal, Barnett‐Itzhaki, Zohar, Valadarsky, Liran, Keren‐Shaul, Hadas, Meningher, Tal, Mendelson, Ella, Mandelboim, Michal, Gat‐Viks, Irit, Amit, Ido
Published 2014

lincRNAs act in the circuitry controlling pluripotency and differentiation

by Guttman, Mitchell, Donaghey, Julie, Carey, Bryce W., Garber, Manuel, Grenier, Jennifer K., Munson, Glen, Young, Geneva, Lucas, Anne Bergstrom, Ach, Robert, Bruhn, Laurakay, Yang, Xiaoping, Amit, Ido, Meissner, Alexander, Regev, Aviv, Rinn, John L., Root, David E., Lander, Eric S.
Published 2011

Nanowire-Mediated Delivery Enables Functional Interrogation of Primary Immune Cells: Application to the Analysis of Chronic Lymphocytic Leukemia

by Shalek, Alex K., Gaublomme, Jellert T., Wang, Lili, Yosef, Nir, Chevrier, Nicolas, Andersen, Mette S., Robinson, Jacob T., Pochet, Nathalie, Neuberg, Donna, Gertner, Rona S., Amit, Ido, Brown, Jennifer R., Hacohen, Nir, Regev, Aviv, Wu, Catherine J., Park, Hongkun
Published 2012

Semiconductor-based DNA sequencing of histone modification states

by Cheng, Christine S., Rai, Kunal, Garber, Manuel, Hollinger, Andrew, Robbins, Dana, Anderson, Scott, Macbeth, Alyssa, Tzou, Austin, Carneiro, Mauricio O., Raychowdhury, Raktima, Russ, Carsten, Hacohen, Nir, Gershenwald, Jeffrey E., Lennon, Niall, Nusbaum, Chad, Chin, Lynda, Regev, Aviv, Amit, Ido
Published 2013

Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data

by Grabherr, Manfred G., Haas, Brian J., Yassour, Moran, Levin, Joshua Z., Thompson, Dawn A., Amit, Ido, Adiconis, Xian, Fan, Lin, Raychowdhury, Raktima, Zeng, Qiandong, Chen, Zehua, Mauceli, Evan, Hacohen, Nir, Gnirke, Andreas, Rhind, Nicholas, di Palma, Federica, Birren, Bruce W., Nusbaum, Chad, Lindblad-Toh, Kerstin, Friedman, Nir, Regev, Aviv
Published 2011