miREE: miRNA recognition elements ensemble

by Reyes-Herrera, Paula H, Ficarra, Elisa, Acquaviva, Andrea, Macii, Enrico
Published 2011

isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation

by Urgese, Gianvito, Paciello, Giulia, Acquaviva, Andrea, Ficarra, Elisa
Published 2016

VDJSeq-Solver: In Silico V(D)J Recombination Detection Tool

by Paciello, Giulia, Acquaviva, Andrea, Pighi, Chiara, Ferrarini, Alberto, Macii, Enrico, Zamo’, Alberto, Ficarra, Elisa
Published 2015

Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer

by Abate, Francesco, Zairis, Sakellarios, Ficarra, Elisa, Acquaviva, Andrea, Wiggins, Chris H, Frattini, Veronique, Lasorella, Anna, Iavarone, Antonio, Inghirami, Giorgio, Rabadan, Raul
Published 2014