Search Results - "linkage disequilibrium"

Comparative mapping and discovery of segregation distortion and linkage disequilibrium across the known fragrance chromosomal regions in a rice F2 population by Hashemi, Farahnaz Sadat Golestan, Yusop, Mohd Rafii, Ismail, Mohd Razi, Tengku Muda Mohamed, Mahmud, Abdul Rahim, Harun, Latif, Mohammad Abdul, Aslani, Farzad

“…High linkage disequilibrium correlations between markers at short distances may show that such markers can maintain high linkage disequilibrium with linked QTLs and are influential for both MAS and QTL mapping analysis. …”
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Comparative mapping and discovery of segregation distortion and linkage disequilibrium across the known fragrance chromosomal regions in a rice F2 population DUPLICATE by Hashemi, Farahnaz Sadat Golestan, Yusop, Mohd Rafii, Ismail, Mohd Razi, Tengku Muda Mohamed, Mahmud, Abdul Rahim, Harun, Latif, Mohamad Abd, Aslani, Farzad

“…High linkage disequilibrium correlations between markers at short distances may show that such markers can maintain high linkage disequilibrium with linked QTLs and are influential for both MAS and QTL mapping analysis. …”
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Single nucleotide polymorphisms of ADRB2 gene and their association with susceptibility for Plasmodium falciparum malaria and asthma in an Indian population by Saadi, A.V., Gupta, H., Angural, A., Dhanya, S., Mony, S., Oberoi, Devesh Varun, D'Souza, S., Sahoo, R., Hande, M., Gopinath, P., Satyamoorthy, K.

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Conserved haplotype blocks within the sheep MHC and low SNP heterozygosity in the Class IIa subregion. by Lee, C., Qin, J., Munyard, Kylie, Subramaniam, N., Wetherall, John, Stear, M., Groth, David

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Development and validation of a high-density SNP genotyping array for African Oil Palm by Kwong, Qi Bin, Teh, Chee Keng, Ong, Ai Ling, Heng, Huey Ying, Lee, Heng Leng, Mohamed, Mohaimi, Low, Joel Zi-Bin, Apparow, Sukganah, Chew, Fook Tim, Mayes, Sean, Kulaveerasingam, Harikrishna, Tammi, Martti, Appleton, David Ross

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Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality by Adewuyi, Emmanuel, Mehta, D., Sapkota, Y., Yoshihara, K., Nyegaard, M., Steinthorsdottir, V., Morris, A.P., Fassbender, A., Rahmioglu, N., Vivo, I.D., Buring, J.E., Zhang, F., Edwards, T.L., Jones, S., Dorien, Peterse, D., Rexrode, K.M., Ridker, P.M., Schork, A.J., MacGregor, S., Martin, N.G., Becker, C.M., Adachi, S., Enomoto, T., Takahashi, A., Kamatani, Y., Matsuda, K., Kubo, M., Thorleifsson, G., Geirsson, R.T., Thorsteinsdottir, U., Wallace, L.M., Yang, J., Velez Edwards, D.R., Low, S.K., Zondervan, K.T., Missmer, S.A., D’Hooghe, T., Stefansson, K., Tung, J.Y., Montgomery, G.W., Chasman, D.I., Nyholt, D.R., Agee, M., Alipanahi, B., Auton, A., Bell, R.K., Bryc, K., Elson, S.L., Fontanillas, P., Furlotte, N.A., Huber, K.E., Kleinman, A., Litterman, N.K., McIntyre, M.H., Mountain, J.L., Noblin, E.S., Northover, C.A.M., Pitts, S.J., Sathirapongsasuti, J.F., Sazonova, O.V., Auta, A., Nyegaard, M., Wilson, C.H., Griffiths, L.R.

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Shared molecular genetic mechanisms underlie endometriosis and migraine comorbidity by Adewuyi, Emmanuel, Sapkota, Y., Auta, A., Yoshihara, K., Nyegaard, M., Griffiths, L.R., Montgomery, G.W., Chasman, D.I., Nyholt, D.R.

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Investigating Genetic Overlap between Alzheimer’s Disease, Lipids, and Coronary Artery Disease: A Large-Scale Genome-Wide Cross Trait Analysis by Kirby, A., Porter, T., Adewuyi, Emmanuel, Laws, S.M.

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Fragmented Population Structure of Plasmodium falciparum in a Region of Declining Endemicity by Anthony, Thomas G., Conway, D.J., Cox-Singh, J., Asmad, Matusop, Shanmuga, Ratnam, Sunita, Shamsul, Balbir, Singh

“…Within all P. falciparum foci, moderate levels of allelic diversity were found, but levels of multilocus linkage disequilibrium were extremely variable. The population with the highest proportion of mixed-clone infections also had the highest allelic diversity and nonsignificant linkage disequilibrium. …”
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Novel guidelines for the analysis of single nucleotide polymorphisms in disease association studies by Fiaschi, Linda

“…An example is ‘Linkage Disequilibrium’ which identifies redundancy in multiple SNPs. …”
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Characterisation of 15 novel microsatellite loci for the grey reef shark (Carcharhinus amblyrhynchos) by Momigliano, P., Robbins, William, Gardner, M., Stow, A.

“…None of the loci deviated significantly from Hardy-Weinberg equilibrium and there was no evidence of Linkage Disequilibrium. Several loci cross-amplified in other carcharhinid species, and will be useful in future studies of this family. © 2014 Springer Science+Business Media Dordrecht.…”
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Characterization of 13 polymorphic microsatellite loci for the dogtooth tuna Gymnosarda unicolor by Bentley, B., Harvey, Euan, Newman, Stephen, Welch, D., Smith, A., Kennington, W.

“…No evidence of linkage disequilibrium was detected between any pairs of loci. …”
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Characterisation of the central region of the sheep major histocompatibility complex by Qin, Jinyi

“…Analysis of pairwise linkage disequilibrium between SNP loci in the cohort of 71 unrelated sheep showed a centre-most region displaying relatively high levels of linkage disequilibrium which was bounded by two regions displaying more variable linkage disequilibrium.It is hypothesised that this mid region of the central region of the sheep MHC may be a block like structure characterized by low recombination similar to those that have been widely described in the human and mouse genomes. …”
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Susceptibility to non-tuberculous mycobacterial disease is influenced by rs1518111 in IL10 by Halstrom, S., Thomson, R., Goullee, H., Baltic, S., Allcock, R., Temple, S., Price, Patricia

“…This demonstrated a significant association between pulmonary NTM disease and one polymorphism (rs1518111) in strong linkage disequilibrium with rs1800896.…”
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Inferring mechanisms of copy number change from haplotype structures at the human DEFA1A3 locus by Black, Holly A., Khan, Fayeza F., Tyson, Jess, Armour, John A.L.

“…The DEFA1A3 locus is intriguing in that it falls within a region of high linkage disequilibrium, despite its high variability in copy number (n = 3–16); hence, the mechanisms responsible for changes in copy number at this locus are unclear. …”
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Isolation and characterization of 17 polymorphic microsatellite loci for the widespread ascidian Didemnum perlucidum (Tunicata, Ascidiacea) by Simpson, Tiffany, Dias, P., Hitchen, Y., Lukehurst, S., Snow, M., Kennington, W.

“…No evidence of linkage disequilibrium between pairs of loci was identified and 12 of the 17 loci were in Hardy-Weinberg equilibrium.…”
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IL1A alleles associate with a virological response to antiretroviral therapy in HIV patients beginning therapy with advanced disease by Price, Patricia, James, I.

“…IL1A-889 and IL1A+4845 were not in linkage disequilibrium in African-American patients, and IL1A+4845T did not affect outcome. © 2009 Wolters Kluwer Health | Lippincott Williams & Wilkins.…”
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Analysis of a previously identified "pain-protective" haplotype and individual polymorphisms in the GCH1 gene in Africans with HIV-associated sensory neuropathy: A genetic associat... by Wadley, A., Lombard, Z., Cherry, C., Price, Patricia, Kamerman, P.

“…Associations were lost after correction for age, gender, and CD4 T-cell count. Linkage disequilibrium differed between our cohort and Caucasians suggesting that these SNPs may not be ideal markers in Africans. …”
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Isolation and Characterization of Alpaca Tetranucleotide Microsatellite Markers by Munyard, Kylie, Ledger, J., Lee, C., Babra, C., Groth, David

“…There was no evidence of linkage disequilibrium (p = 0.064 - 1) or deviation from Hardy-Weinberg equilibrium (p = 1). …”
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Does the relationship between IgE and the CD14 gene depend on ethnicity? by Zhang, Guicheng, Goldblatt, J., LeSouëf, P.

“…There are several explanations for these inconsistencies, including lack of power, linkage disequilibrium, gene-gene interactions, population admixture and gene-environment interactions. …”
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