Search Results - "ancient DNA"

Ancient DNA Archives In Marine Sediments by More, Kuldeep Dilip

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Mitogenomic analyses from ancient DNA by Paijmans, J., Gilbert, Thomas, Hofreiter, M.

“…The analysis of ancient DNA is playing an increasingly important role in conservation genetic, phylogenetic and population genetic analyses, as it allows incorporating extinct species into DNA sequence trees and adds time depth to population genetics studies. …”
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Fossil avian eggshell preserves ancient DNA by Oskam, C., Haile, James, McLay, E., Rigby, P., Allentoft, M., Olsen, M., Bengtsson, C., Miller, Gifford, Schwenninger, J., Jacomb, C., Walter, R., Baynes, A., Dortch, J., Parker-Pearson, M., Gilbert, Thomas, Holdaway, R., Willerslev, E., Bunce, Michael

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High-resolution analysis of cytosine methylation in ancient DNA by Llamas, B., Holland, M., Chen, Kefei, Cropley, J., Cooper, A., Suter, C.

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The identity of the Depuch Island rock-wallaby revealed through ancient DNA by Haouchar, D., Haile, J., Spencer, P., Bunce, Michael

“…Ancient DNA is becoming increasingly recognised as a tool in conservation biology to audit past biodiversity. …”
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Early cave art and ancient DNA record the origin of European bison by Soubrier, J., Gower, G., Chen, Kefei, Richards, S., Llamas, B., Mitchell, K., Ho, S., Kosintsev, P., Lee, M., Baryshnikov, G., Bollongino, R., Bover, P., Burger, J., Chivall, D., Crégut-Bonnoure, E., Decker, J., Doronichev, V., Douka, K., Fordham, D., Fontana, F., Fritz, C., Glimmerveen, J., Golovanova, L., Groves, C., Guerreschi, A., Haak, W., Higham, T., Hofman-Kamińska, E., Immel, A., Julien, M., Krause, J., Krotova, O., Langbein, F., Larson, G., Rohrlach, A., Scheu, A., Schnabel, R., Taylor, J., Tokarska, M., Tosello, G., van der Plicht, J., van Loenen, A., Vigne, J., Wooley, O., Orlando, L., Kowalczyk, R., Shapiro, S., Cooper, A.

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Time to spread your wings: A review of the avian ancient DNA field by Grealy, Alicia, Rawlence, N., Bunce, Michael

“…Here, we review the field of “avian ancient DNA” by summarising the past three decades of literature on this topic. …”
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Reconstructing Past Arctic Faunal Communities Using Ancient DNA in Lake Sediment by Power, Matthew William Paul

“…In this thesis, lake sediment cores collected from Baffin Island, Arctic Canada were investigated using sedimentary ancient DNA techniques. The data presented showcases the power of these techniques to document dramatic ecosystem changes of the past. …”
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Ancient DNA preserved in small bone fragments from the P.W. Lund collection by Seersholm, Frederik V., Hansen, K.L., Heydenrych, Matthew, Hansen, A.J., Bunce, Michael, Allentoft, Morten

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Ancient DNA shows high faunal diversity in the Lesser Caucasus during the Late Pleistocene by Antonosyan, M., Seersholm, Frederik, Grealy, Alicia, Barham, Milo, Werndly, Daniel, Margaryan, A., Cieślik, A., Stafford, T.W., Allentoft, M.E., Bunce, Michael, Yepiskoposyan, L.

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Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries by Carpenter, M., Buenrostro, J., Valdiosera, C., Schroeder, H., Allentoft, M., Sikora, M., Rasmussen, M., Gravel, S., Guillen, S., Nekhrizov, G., Leshtakov, K., Dimitrova, D., Theodossiev, N., Petterner, D., Luiselli, D., Sandoval, K., Moreno-Estrada, A., Li, Y., Wang, Jun, Gilbert, Thomas, Willerslev, E., Greenleaf, W., Bustamante, C.

“…Most ancient specimens contain very low levels of endogenous DNA, precluding the shotgun sequencing of many interesting samples because of cost. Ancient DNA (aDNA) libraries often contain <1% endogenous DNA, with the majority of sequencing capacity taken up by environmental DNA. …”
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Subsistence practices, past biodiversity, and anthropogenic impacts revealed by New Zealand-wide ancient DNA survey by Seersholm, F., Cole, T., Grealy, A., Rawlence, N., Greig, K., Knapp, M., Stat, Michael, Hansen, A., Easton, L., Shepherd, L., Tennyson, A., Scofield, R., Walter, R., Bunce, Michael

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Scrapheap Challenge: A novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages by Murray, D., Haile, J., Dortch, J., White, Nicole, Haouchar, D., Bellgaard, M., Allcock, R., Prideaux, G., Bunce, Michael

“…The development of a cost-effective methodology to taxonomically identify bulk bone is therefore a key challenge. Here, an ancient DNA methodology using high-throughput sequencing is developed to survey and analyse thousands of archaeological bones from southwest Australia. …”
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Ancient DNA from marine sediments: Precautions and considerations for seafloor coring, sample handling and data generation by Armbrecht, L.H., Coolen, Marco, Lejzerowicz, F., George, S.C., Negandhi, K., Suzuki, Y., Young, J., Foster, N.R., Armand, L.K., Cooper, A., Ostrowski, M., Focardi, A., Stat, Michael, Moreau, J.W., Weyrich, L.S.

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Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts by Foote, A., Kaschner, K., Schultze, S., Garilao, C., Ho, S., Post, K., Higham, T., Stokowska, C., Van der Es, H., Embling, C., Gregersen, K., Johansson, F., Willerslev, E., Gilbert, Thomas

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New approaches to ancient DNA: using novel substrates to characterise DNA preservation and past biodiversity in warm-climate ecosystems by Grealy, Alicia Catherine

“…Retrieving ancient DNA (aDNA) from fossils in warm, tropical environments remains a challenge. …”
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A critical evaluation of how ancient DNA bulk bone metabarcoding complements traditional morphological analysis of fossil assemblages by Grealy, Alicia, McDowell, M., Scofield, P., Murray, D., Fusco, D., Haile, J., Prideaux, G., Bunce, Michael

“…This method has been proposed as a means to rapidly and cost-effectively assess general ancient DNA preservation at a site, and to investigate temporal and spatial changes in biodiversity; however, several caveats have yet to be considered. …”
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Identification of Photosynthetic Plankton Communities Using Sedimentary Ancient DNA and Their Response to late-Holocene Climate Change on the Tibetan Plateau by Hou, W., Dong, H., Li, G., Yang, J., Coolen, Marco, Liu, X., Wang, S., Jiang, H., Wu, X., Xiao, H., Lian, B., Wan, Y.

“…Here we established a taxon-specific molecular approach to specifically identify and quantify sedimentary ancient DNA (sedaDNA) of non-fossilized planktonic organisms preserved in a 5-m sediment core from Kusai Lake spanning the last 3100 years. …”
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An assessment of ancient DNA preservation in Holocene-Pleistocene fossil bone excavated from the world heritage Naracoorte Caves, South Australia by Grealy, Alicia, Macken, A., Allentoft, M., Rawlence, N., Reed, E., Bunce, Michael

“…Although there is a long history of research into the fossil deposits of the Naracoorte Caves (South Australia), ancient DNA (aDNA) has not been integrated into any palaeontological study from this World Heritage site. …”
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Ancient DNA reveals complexity in the evolutionary history and taxonomy of the endangered Australian brush-tailed bettongs (Bettongia: Marsupialia: Macropodidae: Potoroinae) by Haouchar, D., Pacioni, C., Haile, J., McDowell, M., Baynes, A., Phillips, M., Austin, J., Pope, L., Bunce, Michael

“…These ancient DNA data were combined with a pre-existing modern DNA data set on the historically broadly distributed brush-tailed bettongs (~300 samples total), to investigate their phylogenetic relationships. …”
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