Search Results - "Transcriptome"

Evolution of the synapse transcriptome by Izquierdo Barraza, Abril

“…A de novo transcriptome assembly pipeline was developed and employed to that end. …”
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Characterization of Leaf Transcriptome in Banksia hookeriana by Lim, S., D'Agui, H., Enright, N., He, Tianhua

“…For better conservation and management, we reported an overview of transcriptome of B. hookeriana using RNA-seq and de novo assembly. …”
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De novo transcriptome assembly with ABySS by Birol, I., Jackman, S., Nielsen, C., Qian, J., Varhol, Richard, Stazyk, G., Morin, R., Zhao, Y., Hirst, M., Schein, J., Horsman, D., Connors, J., Gascoyne, R., Marra, M., Jones, S.

“…Motivation: Whole transcriptome shotgun sequencing data from non-normalized samples offer unique opportunities to study the metabolic states of organisms. …”
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Shoot transcriptome of the giant reed, Arundo donax by Barrero, R., Guerrero, F., Moolhuijzen, Paula, Goolsby, J., Tidwell, J., Bellgard, S., Bellgard, M.

“…To establish a foundational molecular dataset, we used an llumina Hi-Seq protocol to sequence the transcriptome of actively growing shoots from an invasive genotype collected along the Rio Grande River, bordering Texas and Mexico. …”
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Decoding the transcriptomics of oil palm seed germination by Suksa-Ard, Padungsak, Nuanlaong, Sunya, Pooljun, Chettupon, Mohamad Azzeme, Azzreena, Suraninpong, Potjamarn

“…To understand the molecular mechanisms behind this process and improve germination rates and speed, we conducted transcriptome analysis at three stages: pre-incubation, 45-day incubation at 40 °C, and 14-day germination at 32 °C. …”
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A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome by Moreton, Joanna, Dunham, Stephen P., Emes, Richard D.

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Transcriptomic and protein expression analyses of skeletal muscles isolated from Ts1cje mouse model for Down syndrome by Leong, Melody Pui Yee

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Impact of phosphate availability and nutritional status on the wheat transcriptome by Grün, Astrid

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Characterisation of the horse transcriptome from immunologically active tissues by Moreton, Joanna, Malla, Sunir, Aboobaker, Aziz, Tarlinton, Rachael E., Emes, Richard D.

“…This paper outlines sequencing of 184 million transcriptome short reads from immunologically active tissues of three horses including the genome reference “Twilight”. …”
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Transcriptomic analysis of barley plant responses to cold stress by Wu, Jing

“…Here, we present the results of transcriptome analysis indicating the existence of genes of potential importance to cold stress and multiple low-temperature regulatory pathways in addition to the cold response pathway in barley. …”
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Assembly, assessment and availability of de novo generated transcriptomes by Moreton, Joanna, Izquierdo, Abril, Emes, Richard D.

Subjects: “…de novo transcriptome assembly…”
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Insights into the alpaca skin transcriptome in relation to fibre colour by Cransberg, Rhys

“…RNAseq was used to analyse colour genes the alpaca skin-transcriptome, and has provided the first annotation of the alpaca (vicPac2) genome which is not based on in-silico gene-prediction. …”
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Association of host transcriptomic and microbiome profiles with food allergy by Lee, Khui Hung

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Assessing the impact of transcriptomics, proteomics and metabolomics on fungal phytopathology by Tan, Kar-Chun, Ip-Cho, S., Oliver, Richard, Trengove, R., Solomon, P.

“…Peer-reviewed literature is today littered with exciting new tools and techniques that are being used in all areas of biology and medicine. Transcriptomics, proteomics and, more recently, metabolomics are three of these techniques that have impacted on fungal plant pathology. …”
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A Transcriptomic Signature of Mouse Liver Progenitor Cells by Passman, A., Low, J., London, R., Tirnitz-Parker, Nina, Miyajima, A., Tanaka, M., Strick-Marchand, H., Darlington, G., Finch-Edmondson, M., Ochsner, S., Zhu, C., Whelan, J., Callus, B., Yeoh, G.

“…Understanding LPC biology and establishing a sensitive, rapid, and reliable method to detect their presence in the liver will assist diagnosis and facilitate monitoring of treatment outcomes in patients with liver pathologies. A transcriptomic meta-analysis of over 400 microarrays was undertaken to compare LPC lines against datasets of muscle and embryonic stem cell lines, embryonic and developed liver (DL), and HCC. …”
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Comparative histopathological and transcriptomic evaluation of urologic cancer models by de Brot, Simone

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Analysis of chicken transcriptomes to predict functions of novel genes by Ravi, Sharanya, Mat Isa, Nurulfiza, Omar, Abdul Rahman, Bejo, Mohd Hair, Ideris, Aini

“…With that as the primary goal this study aims to look at novel genes that could be potential targets against the disease or could give more information about the pathogenicity of the virus. In this study Transcriptomes from RNA-seq analysis was obtained for 6 different cell lines infected with IBDV. …”
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Effects of arsenic on physiology, anatomy and transcriptomes on aquatic plants by Atabaki, Narges

“…To have a further understanding at the molecular level, transcriptomic analysis was performed on the arsenic-treated water hyacinth using the RNA-Sequencing technique. …”
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Transcriptome Analysis Of Powdery Mildew Infection In Hevea Brasiliensis by Pushpak, Kamerkar Urwashi

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Transcriptome analysis of honey bee larvae following neonicotinoid exposure by Snart, Charles J.P.

“…Simultaneously, the transcriptomes of 3 larval samples each from the control and experimental groups were generated using SOLiD platform sequencing. …”
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