Search Results - "Population genomics"

Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi by Assefa, S., Lim, C., Preston, M.D., Duffy, C.W., Nair, M.B., Adroub, S.A., Kadir, K.A., Goldberg, J.M., Neafsey, D.E., Divis, Paul Cliff Simon, Clark, T.G., Duraisingh, M.T., Conway, D.J., Pain, A., Singh, B.

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The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics by Gopalakrishnan, S., Samaniego Castruita, J., Sinding, M., Kuderna, L., Raikkonen, J., Petersen, B., Sicheritz-Ponten, T., Larson, G., Orlando, L., Marques-Bonet, T., Hansen, A., Dalen, L., Gilbert, Thomas

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Antarctic krill population genomics: Apparent panmixia, but genome complexity and large population size muddy the water by Deagle, B., Faux, C., Kawaguchi, S., Meyer, B., Jarman, Simon

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Global population divergence and admixture of the brown rat (Rattus norvegicus) by Puckett, Emily E., Park, Jane, Combs, Matthew, Blum, Michael J., Bryant, Juliet E., Caccone, Adalgisa, Costa, Federico, Deinum, Eva E., Esther, Alexandra, Himsworth, Chelsea G., Keightley, Peter D., Ko, Albert, Lundkvist, Åke, McElhinney, Lorraine M., Morand, Serge, Robins, Judith, Russell, James, Strand, Tanja M., Suarez, Olga, Yon, Lisa, Munshi-South, Jason

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Colour polymorphism in the terrestrial snail Cepaea nemoralis: from genetics and genomics to spectroscopy and deep learning by Ramos Gonzalez, Daniel

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Inclusion of diverse populations in genomic research and health services: Genomix workshop report by Mathew, Savio S., Barwell, Julian, Khan, Nasaim, Lynch, Ella, Parker, Michael, Qureshi, Nadeem

Subjects: “…Inclusion; Diverse populations; Genomic research; Health services…”
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Population genomics of Australian indigenous Mesorhizobium reveals diverse nonsymbiotic genospecies capable of nitrogen-fixing symbioses following horizontal gene transfer by Colombi, Elena, Hill, Y., Lines, Rose, Sullivan, J.T., Kohlmeier, M.G., Christophersen, Claus, Ronson, C.W., Terpolilli, J.J., Ramsay, Joshua

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Phylogeographic diversity and mosaicism of the Helicobacter pylori tfs integrative and conjugative elements by Delahay, Robin M., Croxall, Nicola J., Stephens, Amberley D.

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Tiger snakes, Notechis scutatus, as a Bioindicator of Wetland Health across the urban matrix of Perth, Western Australia by Lettoof, Damian Christopher

“…The research in this thesis quantifies a suite of contaminants and health parameters in snake populations throughout an urban matrix, assesses patterns of bioaccumulation, parasitism and population genomics on snake health, and concludes tiger snakes can be used as an appropriate bioindicator species.…”
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MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements by Rey-Iglesia, A., Gopalakrishan, S., Carøe, C., Alquezar-Planas, D., Ahlmann Nielsen, A., Röder, T., Bruhn Pedersen, L., Næsborg-Nielsen, C., Sinding, M., Fredensborg Rath, M., Li, Z., Petersen, B., Gilbert, M., Bunce, Michael, Mourier, T., Hansen, A.

“…Given the ease and flexibility of MobiSeq protocol, the method has the potential to be implemented for marker discovery and population genomics across a wide range of organisms—enabling the exploration of diverse evolutionary and conservation questions.…”
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The post-vaccine microevolution of invasive Streptococcus pneumoniae by Cremers, A.J.H., Mobegi, Fredrick, De Jonge, M.I., Van Hijum, S.A.F.T., Meis, J.F., Hermans, P.W.M., Ferwerda, G., Bentley, S.D., Zomer, A.L.

“…Little is known however about pneumococcal population genomics in adult invasive pneumococcal disease (IPD) under vaccine pressure. …”
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Bioindicator snake shows genomic signatures of natural and anthropogenic barriers to gene flow by Lettoof, Damian, Thomson, V.A., Cornelis, Jari, Bateman, Bill, Aubret, Fabien, Gagnon, Monique, von Takach, Brenton

“…Here, we used genome-wide single nucleotide polymorphism (SNP) data to explore the contemporary population genomics of seven tiger snake populations across the urban matrix. …”
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Genome-culture coevolution promotes rapid divergence of killer whale ecotypes by Foote, A., Vijay, N., Avila-Arcos, M., Baird, R., Durban, J., Fumagalli, M., Gibbs, R., Hanson, M., Korneliussen, T., Martin, M., Robertson, K., Sousa, V., Vieira, F., Vinar, T., Wade, P., Worley, K., Excoffier, L., Morin, P., Gilbert, Thomas, Wolf, J.

“…Analysing population genomic data from killer whale ecotypes, which we estimate have globally radiated within less than 250,000 years, we show that genetic structuring including the segregation of potentially functional alleles is associated with socially inherited ecological niche. …”
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Genome-wide profiling in treatment-naive early rheumatoid arthritis reveals DNA methylome changes in T and B lymphocytes by Glossop, John R., Emes, Richard D., Nixon, Nicola B., Packham, Jon C., Fryer, Anthony A., Mattey, Derek L., Farrell, William E.

“…Following recent investigations of T- and B-lymphocytes in established disease, we now characterize in these cell populations genome-wide DNA methylation in treatment-naive patients with early RA. …”
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Climate-assisted persistence of tropical fish vagrants in temperate marine ecosystems by Gajdzik, Laura, DeCarlo, T.M., Koziol, Adam, Mousavi-Derazmahalleh, Mahsa, Coghlan, Megan, Power, Matthew, Bunce, Michael, Fairclough, D.V., Travers, M.J., Moore, G.I., Di Battista, Joseph

“…Here, we used the heatwave-driven expatriation of tropical Black Rabbitfish (Siganus fuscescens) to the temperate environments of Western Australia to assess the ecological and evolutionary mechanisms that may entail their persistence. Population genomic assays for this rabbitfish indicated little genetic differentiation between tropical residents and vagrants to temperate environments due to high migration rates, which were likely enhanced by the marine heatwave. …”
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A conserved hypothetical gene is required but not sufficient for Ptr ToxC production in Pyrenophora tritici-repentis. by Shi, Gongjun State, Kariyawasam, Gayan, Liu, Sanzhen, Leng, Yueqiang, Zhong, Shaobin, Ali, Shaukat, Moolhuijzen, Paula, Moffat, Caroline, Rasmussen, Jack B, Friesen, Timothy L, Faris, Justin D, Liu, Zhaohui

“…The genetic locus controlling the production of Ptr ToxC, termed as ToxC, was mapped to a subtelomeric region using segregating bi-parental populations, genome sequencing, and association analysis. …”
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Range expansion and the origin of USA300 north american epidemic methicillin-resistant Staphylococcus aureus by Challagundla, L., Luo, X., Tickler, I., Didelot, X., Coleman, D., Shore, A., Coombs, Geoffrey, Sordelli, D., Brown, E., Skov, R., Larsen, A., Reyes, J., Robledo, I., Vazquez, G., Rivera, R., Fey, P., Stevenson, K., Wang, S., Kreiswirth, B., Mediavilla, J., Arias, C., Planet, P., Nolan, R., Tenover, F., Goering, R., Robinson, D.

“…Here we use the population genomic signatures expected from the serial founder effects of a geographic range expansion to infer the origin of USA300-NAE and identify polymorphisms associated with its spread. …”
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Validation of genome-wide association studies as a tool to identify virulence factors in parastagonospora nodorum by Gao, Y., Liu, Z., Faris, J., Richards, J., Brueggeman, R., Li, X., Oliver, Richard, McDonald, B., Friesen, T.

“…Because sexual populations of P. nodorum are difficult to develop under lab conditions, genome-wide association study (GWAS) is the best population genomic approach to identify genomic regions associated with traits using natural populations. …”
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