Search Results - "Pathogenomics"

Comparative Pathogenomics Reveals Horizontally Acquired Novel Virulence Genes in Fungi Infecting Cereal Hosts by Gardiner, D., McDonald, M., Covarelli, Lorenzo, Solomon, P., Rusu, A., Marshall, M., Kazan, K., Chakraborty, S., McDonald, B., Manners, J.

Get full text

Overview of genomic and bioinformatic resources for Zymoseptoria. by Renwick, Alison, Oliver, Richard, Hane, James

Subjects: “…Pathogenomics…”
Get full text

Biology, diagnostics, pathogenomics and mitigation strategies of jackfruit-bronzing bacterium Pantoea stewartii subspecies stewartii: what do we know so far about this culprit? by Ibrahim, Rohaya, Ismail, Siti Izera, Md Yasin, Ina-Salwany, Zulperi, Dzarifah

“…This review explores the significance of the jackfruit-bronzing bacterium, its biology, diagnostics, and pathogenomics, emphasizing the pathogen’s virulence and the management strategies to mitigate this disease. …”
Get full text

Sequencing and comparative genome analysis of streptococcus sanguinis and streptococcus gordonii / Zheng Wenning by Zheng, Wenning

“…StreptoBase incorporates sophisticated in-house designed bioinformatics web tools such as Pairwise Genome Comparison (PGC) tool and Pathogenomic Profiling Tool (PathoProT), which facilitate comparative pathogenomics analysis of Streptococcus strains. …”
Get full text
Get full text
Get full text

Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors by Sperschneider, J., Williams, A., Hane, James, Singh, K., Taylor, J.

“…We present our assessment with a view to informing future pathogenomics studies and suggest revised pipelines for secretion prediction to obtain optimal effector predictions in fungi and oomycetes.…”
Get full text

Complete genome sequence analysis and characterization of selected iron regulation genes of Pasteurella multocida serotype A strain PMTB2.1 by Jabeen, Shagufta, Yap, Huan Yong, Abdullah, Faez Firdaus Jesse, Zakaria, Zunita, Mat Isa, Nurulfiza, Tan, Yung Chie, Yap, Soon Joo, Satharasinghe, Dilan Amila, Omar, Abdul Rahman

“…This study describes the analysis of complete genome sequence and pathogenomics of P. multocida strain PMTB2.1. The genome of PMTB2.1 has 2176 genes with more than 40 coding sequences associated with iron regulation and 140 virulence genes including the complete tad locus. …”
Get full text
Get full text

Comparative genome analysis and evolutionary study of human pathogenic Yersinia species / Tan Shi Yang by Tan, Shi Yang

“…YersiniaBase also has in-house developed tools: (1) Pairwise Genome Comparison tool for comparing two user-selected genomes; (2) Pathogenomics Profiling Tool for comparative virulence gene analysis of Yersinia genomes; (3) YersiniaTree for constructing phylogenetic tree of Yersinia. …”
Get full text
Get full text
Get full text

Selective sequencing on an industrial scale by Munro, Rory J.

“…In Chapter 2 we discuss a real-life application of real-time adaptive-sampling: viral pathogenomic surveillance. We describe a framework that optimises sequencing: it can provide adaptive-sampling targets for amplicon-based viral sequencing, increase the speed and efficiency of a run, and further preserve flow cell health via metrics that determine when all samples have produced enough data. …”
Get full text

Complete genome sequencing and analysis of Pasteurella multocida strain PMTB2.1 and expression of selected genes in iron-restricted environment by Jabeen, Shagufta

“…In conclusion, this study has provided insight on the genomic structure of PMTB2.1 in terms of potential genes that can functions as virulence factors and comparative pathogenomic information of valuable importance for future study in elucidating the mechanisms behind the ability of the bacterium in causing diseases in susceptible animals.…”
Get full text
Get full text