Discovery of pathogenesis related and effector genes of Erwinia mallotivora in Carica papaya (Eksotika I) seedlings via transcriptomic analysis
A comparative transcriptome of Erwinia mallotivora library across early infection time points (6, 24 and 48 h) on papaya seedling Carica papaya (Eksotika I) was performed. A total of 5,680 genes were identified as differentially expressed genes (DEGs). The highest numbers of DEGs in all three E. mal...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Friends Science Publishers
2020
|
| Online Access: | http://psasir.upm.edu.my/id/eprint/88484/ http://psasir.upm.edu.my/id/eprint/88484/1/ABSTRACT.pdf |
| _version_ | 1848860628556447744 |
|---|---|
| author | Juri, Nor Mustaiqazah Samsuddin, Aimera Farhana Abdul Murad, Abdul Munir Tamizi, Amin Asyraf Shaharuddin, Noor Azmi Abu Bakar, Norliza |
| author_facet | Juri, Nor Mustaiqazah Samsuddin, Aimera Farhana Abdul Murad, Abdul Munir Tamizi, Amin Asyraf Shaharuddin, Noor Azmi Abu Bakar, Norliza |
| author_sort | Juri, Nor Mustaiqazah |
| building | UPM Institutional Repository |
| collection | Online Access |
| description | A comparative transcriptome of Erwinia mallotivora library across early infection time points (6, 24 and 48 h) on papaya seedling Carica papaya (Eksotika I) was performed. A total of 5,680 genes were identified as differentially expressed genes (DEGs). The highest numbers of DEGs in all three E. mallotivora infection time points were accounted in the biosynthesis of secondary metabolites, microbial metabolism in diverse environments and ATP binding cassette transporters based on KEGG-based analysis. The functional annotation of the DEGs via Gene Ontology analysis has revealed a highly complex (more than 2,000 functional terms) yet a specific virulence strategy adapted by E. mallotivora across the infection time points. Our findings have uncovered the key factors and pathogenicity mechanism adopted by E. mallotivora as the infection progresses. |
| first_indexed | 2025-11-15T12:48:16Z |
| format | Article |
| id | upm-88484 |
| institution | Universiti Putra Malaysia |
| institution_category | Local University |
| language | English |
| last_indexed | 2025-11-15T12:48:16Z |
| publishDate | 2020 |
| publisher | Friends Science Publishers |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | upm-884842021-12-23T08:28:30Z http://psasir.upm.edu.my/id/eprint/88484/ Discovery of pathogenesis related and effector genes of Erwinia mallotivora in Carica papaya (Eksotika I) seedlings via transcriptomic analysis Juri, Nor Mustaiqazah Samsuddin, Aimera Farhana Abdul Murad, Abdul Munir Tamizi, Amin Asyraf Shaharuddin, Noor Azmi Abu Bakar, Norliza A comparative transcriptome of Erwinia mallotivora library across early infection time points (6, 24 and 48 h) on papaya seedling Carica papaya (Eksotika I) was performed. A total of 5,680 genes were identified as differentially expressed genes (DEGs). The highest numbers of DEGs in all three E. mallotivora infection time points were accounted in the biosynthesis of secondary metabolites, microbial metabolism in diverse environments and ATP binding cassette transporters based on KEGG-based analysis. The functional annotation of the DEGs via Gene Ontology analysis has revealed a highly complex (more than 2,000 functional terms) yet a specific virulence strategy adapted by E. mallotivora across the infection time points. Our findings have uncovered the key factors and pathogenicity mechanism adopted by E. mallotivora as the infection progresses. Friends Science Publishers 2020 Article PeerReviewed text en http://psasir.upm.edu.my/id/eprint/88484/1/ABSTRACT.pdf Juri, Nor Mustaiqazah and Samsuddin, Aimera Farhana and Abdul Murad, Abdul Munir and Tamizi, Amin Asyraf and Shaharuddin, Noor Azmi and Abu Bakar, Norliza (2020) Discovery of pathogenesis related and effector genes of Erwinia mallotivora in Carica papaya (Eksotika I) seedlings via transcriptomic analysis. International Journal of Agriculture and Biology, 23 (5). 1021 - 1032. ISSN 1560-8530 https://www.cabdirect.org/cabdirect/abstract/20203271171 10.17957/IJAB/15.1382 |
| spellingShingle | Juri, Nor Mustaiqazah Samsuddin, Aimera Farhana Abdul Murad, Abdul Munir Tamizi, Amin Asyraf Shaharuddin, Noor Azmi Abu Bakar, Norliza Discovery of pathogenesis related and effector genes of Erwinia mallotivora in Carica papaya (Eksotika I) seedlings via transcriptomic analysis |
| title | Discovery of pathogenesis related and effector genes of Erwinia mallotivora in Carica papaya (Eksotika I) seedlings via transcriptomic analysis |
| title_full | Discovery of pathogenesis related and effector genes of Erwinia mallotivora in Carica papaya (Eksotika I) seedlings via transcriptomic analysis |
| title_fullStr | Discovery of pathogenesis related and effector genes of Erwinia mallotivora in Carica papaya (Eksotika I) seedlings via transcriptomic analysis |
| title_full_unstemmed | Discovery of pathogenesis related and effector genes of Erwinia mallotivora in Carica papaya (Eksotika I) seedlings via transcriptomic analysis |
| title_short | Discovery of pathogenesis related and effector genes of Erwinia mallotivora in Carica papaya (Eksotika I) seedlings via transcriptomic analysis |
| title_sort | discovery of pathogenesis related and effector genes of erwinia mallotivora in carica papaya (eksotika i) seedlings via transcriptomic analysis |
| url | http://psasir.upm.edu.my/id/eprint/88484/ http://psasir.upm.edu.my/id/eprint/88484/ http://psasir.upm.edu.my/id/eprint/88484/ http://psasir.upm.edu.my/id/eprint/88484/1/ABSTRACT.pdf |