Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis
The study examined the phylogenetic relationships between the Cyprinids fishes Barbonymus gonionotus, Barbonymus schwanenfeldii and Tor tambroides using DNA sequencing of mitochondrial cytochrome c oxide I (COI) gene fragment using polymerase chain reaction. Sequencing of DNA samples were compared t...
| Main Author: | |
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| Format: | Project Paper Report |
| Language: | English |
| Published: |
2013
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| Online Access: | http://psasir.upm.edu.my/id/eprint/82907/ http://psasir.upm.edu.my/id/eprint/82907/1/FP%202013%20116%20-%20IR.pdf |
| _version_ | 1848859389158490112 |
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| author | Rozali, Siti Rawaida |
| author_facet | Rozali, Siti Rawaida |
| author_sort | Rozali, Siti Rawaida |
| building | UPM Institutional Repository |
| collection | Online Access |
| description | The study examined the phylogenetic relationships between the Cyprinids fishes Barbonymus gonionotus, Barbonymus schwanenfeldii and Tor tambroides using DNA sequencing of mitochondrial cytochrome c oxide I (COI) gene fragment using polymerase chain reaction. Sequencing of DNA samples were compared to the DNA reference sequence sample in GenBank using the BLAST program. Phylogenetic analysis of eight sequences using maximum likelihood (ML), minimum evolution (ME), and neighbor joining (NJ) resulted in similar tree topologies. The maximum pairwise genetic distance was Barbonymus gonionotus and Tor tambroides (15%), while the minimum value was between Barbonymus gonionotus and Barbonymus schwanenfeldii (11%). Comparative genetics of the genus Tor and Barbonymus not show a significant difference to the value of 16%. |
| first_indexed | 2025-11-15T12:28:34Z |
| format | Project Paper Report |
| id | upm-82907 |
| institution | Universiti Putra Malaysia |
| institution_category | Local University |
| language | English |
| last_indexed | 2025-11-15T12:28:34Z |
| publishDate | 2013 |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | upm-829072020-07-27T07:36:46Z http://psasir.upm.edu.my/id/eprint/82907/ Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis Rozali, Siti Rawaida The study examined the phylogenetic relationships between the Cyprinids fishes Barbonymus gonionotus, Barbonymus schwanenfeldii and Tor tambroides using DNA sequencing of mitochondrial cytochrome c oxide I (COI) gene fragment using polymerase chain reaction. Sequencing of DNA samples were compared to the DNA reference sequence sample in GenBank using the BLAST program. Phylogenetic analysis of eight sequences using maximum likelihood (ML), minimum evolution (ME), and neighbor joining (NJ) resulted in similar tree topologies. The maximum pairwise genetic distance was Barbonymus gonionotus and Tor tambroides (15%), while the minimum value was between Barbonymus gonionotus and Barbonymus schwanenfeldii (11%). Comparative genetics of the genus Tor and Barbonymus not show a significant difference to the value of 16%. 2013 Project Paper Report NonPeerReviewed text en http://psasir.upm.edu.my/id/eprint/82907/1/FP%202013%20116%20-%20IR.pdf Rozali, Siti Rawaida (2013) Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis. [Project Paper Report] |
| spellingShingle | Rozali, Siti Rawaida Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis |
| title | Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis |
| title_full | Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis |
| title_fullStr | Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis |
| title_full_unstemmed | Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis |
| title_short | Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis |
| title_sort | phylogenetic relationship between barbonymus gonionotus, barbonymus schwanenfeldii, and tor tambroides inferred from mitochondrial cytochrome c oxidase i (coi) sequence analysis |
| url | http://psasir.upm.edu.my/id/eprint/82907/ http://psasir.upm.edu.my/id/eprint/82907/1/FP%202013%20116%20-%20IR.pdf |