RNA-seq analysis in plant–fungus interactions
Many fungi are pathogens that infect important food and plantation crops, reducing both yield and quality of food products. Understanding plant–fungus interactions is crucial as knowledge in this area is required to formulate sustainable strategies to improve plant health and crop productivity. High...
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| Format: | Article |
| Language: | English |
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Springer Nature
2017
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| Online Access: | http://psasir.upm.edu.my/id/eprint/63829/ http://psasir.upm.edu.my/id/eprint/63829/1/RNA-seq.pdf |
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| author | Ling, Ho Chai Yee, Wai Yan |
| author_facet | Ling, Ho Chai Yee, Wai Yan |
| author_sort | Ling, Ho Chai |
| building | UPM Institutional Repository |
| collection | Online Access |
| description | Many fungi are pathogens that infect important food and plantation crops, reducing both yield and quality of food products. Understanding plant–fungus interactions is crucial as knowledge in this area is required to formulate sustainable strategies to improve plant health and crop productivity. High-throughput RNA-sequencing (RNA-seq) enables researchers to gain insights of the mixed and multispecies transcriptomes in plant–fungus interactions. Interpretation of huge data generated by RNA-seq has led to new insights in this area, facilitating a system approach in unraveling interactions between plant hosts and fungal pathogens. In this review, the application and challenges of RNA-seq analysis in plant–fungus interactions will be discussed. |
| first_indexed | 2025-11-15T11:16:39Z |
| format | Article |
| id | upm-63829 |
| institution | Universiti Putra Malaysia |
| institution_category | Local University |
| language | English |
| last_indexed | 2025-11-15T11:16:39Z |
| publishDate | 2017 |
| publisher | Springer Nature |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | upm-638292019-05-28T06:34:22Z http://psasir.upm.edu.my/id/eprint/63829/ RNA-seq analysis in plant–fungus interactions Ling, Ho Chai Yee, Wai Yan Many fungi are pathogens that infect important food and plantation crops, reducing both yield and quality of food products. Understanding plant–fungus interactions is crucial as knowledge in this area is required to formulate sustainable strategies to improve plant health and crop productivity. High-throughput RNA-sequencing (RNA-seq) enables researchers to gain insights of the mixed and multispecies transcriptomes in plant–fungus interactions. Interpretation of huge data generated by RNA-seq has led to new insights in this area, facilitating a system approach in unraveling interactions between plant hosts and fungal pathogens. In this review, the application and challenges of RNA-seq analysis in plant–fungus interactions will be discussed. Springer Nature 2017 Article PeerReviewed text en http://psasir.upm.edu.my/id/eprint/63829/1/RNA-seq.pdf Ling, Ho Chai and Yee, Wai Yan (2017) RNA-seq analysis in plant–fungus interactions. Crop Improvement. pp. 1-25. ISSN 0256-0933 https://link.springer.com/chapter/10.1007/978-3-319-65079-1_1 10.1007/978-3-319-65079-1_1 |
| spellingShingle | Ling, Ho Chai Yee, Wai Yan RNA-seq analysis in plant–fungus interactions |
| title | RNA-seq analysis in plant–fungus interactions |
| title_full | RNA-seq analysis in plant–fungus interactions |
| title_fullStr | RNA-seq analysis in plant–fungus interactions |
| title_full_unstemmed | RNA-seq analysis in plant–fungus interactions |
| title_short | RNA-seq analysis in plant–fungus interactions |
| title_sort | rna-seq analysis in plant–fungus interactions |
| url | http://psasir.upm.edu.my/id/eprint/63829/ http://psasir.upm.edu.my/id/eprint/63829/ http://psasir.upm.edu.my/id/eprint/63829/ http://psasir.upm.edu.my/id/eprint/63829/1/RNA-seq.pdf |