Reducing the number of artifactual repeats in de novo assembly of RNA-Seq data by optimizing the assembly pipeline

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Reducing the number of artifactual repeats in de novo assembly of RNA-Seq data by optimizing the assembly pipeline

One of the problems of de novo assembly is the occurrence of artifactual direct or inverted repeats that are mainly formed by misassembly of short sequencing reads and cannot be differentiated from real sequence repeats. In this study, we compared the frequency of artifactual repeats generated by fo...

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Bibliographic Details
Main Authors:	Lee, Wei Kang, Mohd Zainuddin, Nur Aﬁza, Teh, Hui Ying, Lim, Yi Yi, Jaafar, Mohd Uzair, Khoo, Jia Shiun, Ghazali, Ahmad Kamal, Namasivayam, Parameswari, Abdullah, Janna Ong, Ho, Chai Ling
Format:	Article
Language:	English
Published:	Elsevier 2017
Online Access:	http://psasir.upm.edu.my/id/eprint/62927/ http://psasir.upm.edu.my/id/eprint/62927/1/Reducing%20the%20number%20of%20artifactual%20repeats%20in%20de%20novo%20.pdf

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