Analysis of banana transcriptome in banana roots in response to infection by tropical race 4 of Fusarium oxysporum f. sp. cubense
Pisang Berangan, is the most popular dessert banana cultivar in Malaysia. This AA type is grouped within highly nutritious type of fruits. Therefore, its production to cater for human needs is crucial. However, fusarium wilt disease is threatening world banana production. Availability of banana tran...
| Main Authors: | , , , , , |
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| Format: | Conference or Workshop Item |
| Language: | English |
| Published: |
Institute of Plantation Studies, Universiti Putra Malaysia
2017
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| Online Access: | http://psasir.upm.edu.my/id/eprint/58850/ http://psasir.upm.edu.my/id/eprint/58850/1/Technical_Paper_1.pdf |
| _version_ | 1848853759936954368 |
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| author | Munusamy, Umaiyal Mohd Yusuf, Yusmin Baharum, Nadiya Akmal Zaidi, Kamilatulhusna Abdullah, Siti Nor Akmar Othman, Rofina Yasmin |
| author_facet | Munusamy, Umaiyal Mohd Yusuf, Yusmin Baharum, Nadiya Akmal Zaidi, Kamilatulhusna Abdullah, Siti Nor Akmar Othman, Rofina Yasmin |
| author_sort | Munusamy, Umaiyal |
| building | UPM Institutional Repository |
| collection | Online Access |
| description | Pisang Berangan, is the most popular dessert banana cultivar in Malaysia. This AA type is grouped within highly nutritious type of fruits. Therefore, its production to cater for human needs is crucial. However, fusarium wilt disease is threatening world banana production. Availability of banana transcriptome will be highly useful for improving banana gene annotation and for biological research. The knowledge of global gene expression patterns that are influenced by the Fusarium races, the varieties of infected banana cultivar and the environmental conditions will help to provide better understanding on the host responses towards the infection. RNA samples from laboratory infected Berangan were pooled for transcriptomics using the Illumina Technology. Analysis of the banana transcriptome led to the identification of overexpressed genes. Differential gene expression (DGE) profiling analysis reveals that the infection by Fusarium caused changes in the global gene expression profiles in the banana roots 2 hrs post infection. The infection led to the induction of many well known defense related genes. This transcriptome profiling analysis indicates that early detection is possible and through this any infected plant can be identified and further essential precaution can be carried out. |
| first_indexed | 2025-11-15T10:59:05Z |
| format | Conference or Workshop Item |
| id | upm-58850 |
| institution | Universiti Putra Malaysia |
| institution_category | Local University |
| language | English |
| last_indexed | 2025-11-15T10:59:05Z |
| publishDate | 2017 |
| publisher | Institute of Plantation Studies, Universiti Putra Malaysia |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | upm-588502018-02-07T05:00:26Z http://psasir.upm.edu.my/id/eprint/58850/ Analysis of banana transcriptome in banana roots in response to infection by tropical race 4 of Fusarium oxysporum f. sp. cubense Munusamy, Umaiyal Mohd Yusuf, Yusmin Baharum, Nadiya Akmal Zaidi, Kamilatulhusna Abdullah, Siti Nor Akmar Othman, Rofina Yasmin Pisang Berangan, is the most popular dessert banana cultivar in Malaysia. This AA type is grouped within highly nutritious type of fruits. Therefore, its production to cater for human needs is crucial. However, fusarium wilt disease is threatening world banana production. Availability of banana transcriptome will be highly useful for improving banana gene annotation and for biological research. The knowledge of global gene expression patterns that are influenced by the Fusarium races, the varieties of infected banana cultivar and the environmental conditions will help to provide better understanding on the host responses towards the infection. RNA samples from laboratory infected Berangan were pooled for transcriptomics using the Illumina Technology. Analysis of the banana transcriptome led to the identification of overexpressed genes. Differential gene expression (DGE) profiling analysis reveals that the infection by Fusarium caused changes in the global gene expression profiles in the banana roots 2 hrs post infection. The infection led to the induction of many well known defense related genes. This transcriptome profiling analysis indicates that early detection is possible and through this any infected plant can be identified and further essential precaution can be carried out. Institute of Plantation Studies, Universiti Putra Malaysia 2017 Conference or Workshop Item PeerReviewed application/pdf en http://psasir.upm.edu.my/id/eprint/58850/1/Technical_Paper_1.pdf Munusamy, Umaiyal and Mohd Yusuf, Yusmin and Baharum, Nadiya Akmal and Zaidi, Kamilatulhusna and Abdullah, Siti Nor Akmar and Othman, Rofina Yasmin (2017) Analysis of banana transcriptome in banana roots in response to infection by tropical race 4 of Fusarium oxysporum f. sp. cubense. In: International Conference on Big Data Applications in Agriculture (ICBAA2017), 5-6 Dec. 2017, Auditorium Putra, TNCPI Building, Universiti Putra Malaysia. (pp. 75-81). http://spel2.upm.edu.my/webupm/upload/dokumen/penerbitan/20171231214139ICBAA2017_Technical_Paper_1.pdf |
| spellingShingle | Munusamy, Umaiyal Mohd Yusuf, Yusmin Baharum, Nadiya Akmal Zaidi, Kamilatulhusna Abdullah, Siti Nor Akmar Othman, Rofina Yasmin Analysis of banana transcriptome in banana roots in response to infection by tropical race 4 of Fusarium oxysporum f. sp. cubense |
| title | Analysis of banana transcriptome in banana roots in response to infection by tropical race 4 of Fusarium oxysporum f. sp. cubense |
| title_full | Analysis of banana transcriptome in banana roots in response to infection by tropical race 4 of Fusarium oxysporum f. sp. cubense |
| title_fullStr | Analysis of banana transcriptome in banana roots in response to infection by tropical race 4 of Fusarium oxysporum f. sp. cubense |
| title_full_unstemmed | Analysis of banana transcriptome in banana roots in response to infection by tropical race 4 of Fusarium oxysporum f. sp. cubense |
| title_short | Analysis of banana transcriptome in banana roots in response to infection by tropical race 4 of Fusarium oxysporum f. sp. cubense |
| title_sort | analysis of banana transcriptome in banana roots in response to infection by tropical race 4 of fusarium oxysporum f. sp. cubense |
| url | http://psasir.upm.edu.my/id/eprint/58850/ http://psasir.upm.edu.my/id/eprint/58850/ http://psasir.upm.edu.my/id/eprint/58850/1/Technical_Paper_1.pdf |