A partial length cyclophilin-encoding (cyp) cDNA isolated from Ganoderma boninense
Oil palm is subjected to various pests and diseases, one of the most important being basal stem rot (BSR) disease which is caused by a few species of Ganoderma. Ganoderma is a white rot fungus that attacks oil palm around the world. During plant infection, a few genes are highly express...
| Main Authors: | , , , , , |
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| Format: | Article |
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Malaysian Palm Oil Board
2011
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| Online Access: | http://psasir.upm.edu.my/id/eprint/22388/ |
| _version_ | 1848844471485071360 |
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| author | Lim, Fook Hwa Iskandar, Nor Fakhrana Shaharuddin, Noor Azmi Abd Rasid, Omar Abu Seman, Idris Ghulam Ahmad, Ahmad Parveez |
| author_facet | Lim, Fook Hwa Iskandar, Nor Fakhrana Shaharuddin, Noor Azmi Abd Rasid, Omar Abu Seman, Idris Ghulam Ahmad, Ahmad Parveez |
| author_sort | Lim, Fook Hwa |
| building | UPM Institutional Repository |
| collection | Online Access |
| description | Oil palm is subjected to various pests and diseases, one of the most important being basal stem rot (BSR) disease which is caused by a few species of Ganoderma. Ganoderma is a white rot fungus that attacks oil palm around the world. During plant infection, a few genes are highly expressed in the fungus and have been linked to fungal pathogenicity. One of these genes is the cyclophilin-encoding gene (cyp). In this study, degenerate primers have been designed based on the conserved regions of the gene. PCR amplification successfully amplified a 212 bp DNA fragment from Ganoderma boninense cDNAs. The DNA sequence analysis showed that the fragment has about 80% similarity to other plant pathogenic fungal cyp genes. The translated amino acid sequence was also highly identical to other plant pathogenic fungal cyclophilin. Conserve domain search results show that the obtained sequence has similarity to the cyclophilin_ABH-like domain. |
| first_indexed | 2025-11-15T08:31:27Z |
| format | Article |
| id | upm-22388 |
| institution | Universiti Putra Malaysia |
| institution_category | Local University |
| last_indexed | 2025-11-15T08:31:27Z |
| publishDate | 2011 |
| publisher | Malaysian Palm Oil Board |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | upm-223882015-12-07T05:22:27Z http://psasir.upm.edu.my/id/eprint/22388/ A partial length cyclophilin-encoding (cyp) cDNA isolated from Ganoderma boninense Lim, Fook Hwa Iskandar, Nor Fakhrana Shaharuddin, Noor Azmi Abd Rasid, Omar Abu Seman, Idris Ghulam Ahmad, Ahmad Parveez Oil palm is subjected to various pests and diseases, one of the most important being basal stem rot (BSR) disease which is caused by a few species of Ganoderma. Ganoderma is a white rot fungus that attacks oil palm around the world. During plant infection, a few genes are highly expressed in the fungus and have been linked to fungal pathogenicity. One of these genes is the cyclophilin-encoding gene (cyp). In this study, degenerate primers have been designed based on the conserved regions of the gene. PCR amplification successfully amplified a 212 bp DNA fragment from Ganoderma boninense cDNAs. The DNA sequence analysis showed that the fragment has about 80% similarity to other plant pathogenic fungal cyp genes. The translated amino acid sequence was also highly identical to other plant pathogenic fungal cyclophilin. Conserve domain search results show that the obtained sequence has similarity to the cyclophilin_ABH-like domain. Malaysian Palm Oil Board 2011-08 Article PeerReviewed Lim, Fook Hwa and Iskandar, Nor Fakhrana and Shaharuddin, Noor Azmi and Abd Rasid, Omar and Abu Seman, Idris and Ghulam Ahmad, Ahmad Parveez (2011) A partial length cyclophilin-encoding (cyp) cDNA isolated from Ganoderma boninense. Journal of Oil Palm Research, 23. pp. 1115-1120. ISSN 1511-2780 http://jopr.mpob.gov.my/a-partial-length-cyclophilin-encoding-cyp-cdna-isolated-from-ganoderma-boninense/ |
| spellingShingle | Lim, Fook Hwa Iskandar, Nor Fakhrana Shaharuddin, Noor Azmi Abd Rasid, Omar Abu Seman, Idris Ghulam Ahmad, Ahmad Parveez A partial length cyclophilin-encoding (cyp) cDNA isolated from Ganoderma boninense |
| title | A partial length cyclophilin-encoding (cyp) cDNA isolated from Ganoderma boninense |
| title_full | A partial length cyclophilin-encoding (cyp) cDNA isolated from Ganoderma boninense |
| title_fullStr | A partial length cyclophilin-encoding (cyp) cDNA isolated from Ganoderma boninense |
| title_full_unstemmed | A partial length cyclophilin-encoding (cyp) cDNA isolated from Ganoderma boninense |
| title_short | A partial length cyclophilin-encoding (cyp) cDNA isolated from Ganoderma boninense |
| title_sort | partial length cyclophilin-encoding (cyp) cdna isolated from ganoderma boninense |
| url | http://psasir.upm.edu.my/id/eprint/22388/ http://psasir.upm.edu.my/id/eprint/22388/ |