Predicting minimum energy structure of a peptide via a modified potential smoothing kernel

QR Code

Predicting minimum energy structure of a peptide via a modified potential smoothing kernel

A global optimization approach is proposed for finding the global minimum energy configuration of a peptide. First, the original nonsmooth total potential energy function of a peptide, composed using the AMBER model, is transformed to a smoother function (shifted-impulsive transformation) via a pro...

Full description

Bibliographic Details
Main Authors:	Leong, Wah June, Abu Hassan, Malik
Format:	Article
Language:	English
Published:	Institute for Mathematical Research, Universiti Putra Malaysia 2008
Online Access:	http://psasir.upm.edu.my/id/eprint/12595/ http://psasir.upm.edu.my/id/eprint/12595/1/03.LEONG_WAH_JUNE.pdf

Similar Items

Minimum energy control of fractional-order differential-algebraic system
by: Muhafzan, et al.
Published: (2022)

A new gradient method via least change secant update
by: Leong, Wah June, et al.
Published: (2011)

A new stepsize for gradient method via weak secant equation
by: Leong, Wah June
Published: (2007)

An application of predicting student performance using kernel k-means and smooth support vector machine
by: Sajadin, Sembiring
Published: (2012)

Improved Hessian approximation with modified quasi-Cauchy relation for a gradient-type method
by: Leong, Wah June, et al.
Published: (2010)

Modified Quasi-Newton Methods For Large-Scale Unconstrained Optimization
by: Leong, Wah June
Published: (2003)

A monotone gradient method via weak secant equation for unconstrained optimization
by: Leong, Wah June, et al.
Published: (2010)

Effects of smooth, medium smooth and medium reconstruction kernels on image quality in three-phase CT of liver
by: Nur Amalina Ameruddin,, et al.
Published: (2021)

A new gradient method via quasi-Cauchy relation which guarantees descent
by: Abu Hassan, Malik, et al.
Published: (2009)

Kernel smoothing for ROC curve and estimation for thyroid stimulating hormone
by: Tazhibi Mehdi,, et al.
Published: (2011)

Memoryless modified symmetric rank-one method for large-scale unconstrained optimization
by: Modarres, Farzin, et al.
Published: (2009)

Improved Hessian approximations with modified secant equations for symmetric rank-one method
by: Modarres, Farzin, et al.
Published: (2011)

New quasi-Newton methods via higher order tensor models.
by: Biglari, Fahmeh, et al.
Published: (2011)

Convergence of symmetric rank-one method based on modified Quasi-Newton equation
by: Khiyabani, Farzin Modarres, et al.
Published: (2010)

Prediction Of Antimicrobial Peptides Based On Sequence Alignment And Secondary Structure Sequence And Segment Sequence.pdf
by: Soh , Meng Wah
Published: (2015)

Proximal linearized method for sparse equity portfolio optimization with minimum transaction cost
by: Sim, Hong Seng, et al.
Published: (2023)

Modified minimum maximum exclusive mean filter
by: Marhaban, Mohammad Hamiruce, et al.
Published: (2008)

Memoryless symmetric rank-one method based on modified secant equation for large-scale unconstrained optimization
by: Khiyabani, Farzin Modarres, et al.
Published: (2009)

Adaptive optimal kernel smooth-windowed wigner-ville distribution for digital communication signal
by: Tan, J. L., et al.
Published: (2008)

A restarting approach on symmetric rank one update for unconstrained optimization
by: Leong, Wah June, et al.
Published: (2009)

Convergence of a positive definite symmetric rank one method with restart
by: Leong, Wah June, et al.
Published: (2009)

A family of least change diagonally quasi-Newton methods for nonlinear equations
by: Leong, Wah June, et al.
Published: (2010)

Diagonal hessian approximation for limited memory quasi-newton via variational principle
by: Marjugi, Siti Mahani, et al.
Published: (2013)

An efficient solver for systems of nonlinear equations with singular Jacobian via diagonal updating
by: Waziri, Mohammed Yusuf, et al.
Published: (2010)

The Minimum Energy Problem for Positive Linear Systems
by: Chotijah, Siti
Published: (2017)

Low molecular weight peptides generated from palm kernel cake via solid state lacto-fermentation extend the shelf life of bread
by: Mohamad Asri, Nursyafiqah, et al.
Published: (2020)

A fast dual gradient method for separable convex optimization via smoothing
by: Li, J., et al.
Published: (2016)

Numerical solution of first kind Fredholm integral equations with semi-smooth kernel: A two-stage iterative approach
by: Muthuvalu, Mohana Sundaram, et al.
Published: (2024)

Higher order curvature information and its application in a modified diagonal Secant method
by: Enshaei, Sharareh, et al.
Published: (2018)

Identification and characterization of papain-generated antioxidant peptides from palm kernel cake proteins
by: Zarei, Mohammad, et al.
Published: (2014)

Development of a novel antibacterial peptide pam-5 via combination of phage display selection and computer-assisted modification
by: Yuen, Hawk Leong
Published: (2023)

Memoryless quasi-Newton-type methods via some weak secant relations for large-scale unconstrained optimization
by: Lim, Keat Hee, et al.
Published: (2024)

Computational Methods for the Prediction of the Structure and Interactions of Coiled-Coil Peptides
by: Gandhi, Neha, et al.
Published: (2008)

A class of diagonal quasi-newton methods for large-scale convex minimization
by: Leong, Wah June
Published: (2015)

Sufficient descent three term conjugate gradient method via symmetric rank-one update for large-scale optimization
by: Moyi, Aliyu Usman, et al.
Published: (2016)

Volatility forecasting of real estate stock in Malaysia with smooth transition exponential smoothing
by: Gooi, Leong Mow, et al.
Published: (2018)

Diagonal quasi-Newton method via variational principle under generalized Frobenius norm
by: Enshaei, Sharareh, et al.
Published: (2016)

Total synthesis of the post-translationally modified polyazole peptide antibiotic plantazolicin A
by: Wada, Hiroki, et al.
Published: (2015)

ZIF-90 nanoparticles modified with a homing peptide for targeted delivery of cisplatin
by: Abubakar, Adamu, et al.
Published: (2022)

A characterization of maximal Lyapunov function for stability of a nonlinear system
by: Abedi, Fakhreddin, et al.
Published: (2010)