Evaluation of Convolutionary Neural Networks Modeling of DNA Sequences using Ordinal versus one-hot Encoding Method
Convolutionary neural network (CNN) is a popular choice for supervised DNA motif prediction due to its very high performance. To employ CNN, the input DNA sequences are required to be encoded as numerical values and represented as either vectors or multi-dimensional matrices. This paper evaluates a...
| Main Authors: | Choong, Allen Chieng Hoon, Lee, Nung Kion |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
IEEE
2018
|
| Subjects: | |
| Online Access: | http://ir.unimas.my/id/eprint/19014/ http://ir.unimas.my/id/eprint/19014/1/encoding1.pdf |
Similar Items
Evaluation of Convolutionary Neural Networks Modeling of DNA Sequences using Ordinal versus one-hot Encoding Method
by: Chieng, Allen Hoon Choong, et al.
Published: (2017)
by: Chieng, Allen Hoon Choong, et al.
Published: (2017)
Filtering of Background DNA Sequences Improves DNA Motif Prediction Using Clustering Techniques
by: Lee, Nung Kion, et al.
Published: (2013)
by: Lee, Nung Kion, et al.
Published: (2013)
Data Mining for Building Neural Protein Sequence Classification Systems with Improved Performance
by: Wang, Dianhui, et al.
Published: (2003)
by: Wang, Dianhui, et al.
Published: (2003)
MLP Neural Networks using Octave NN Package
by: Lee, Nung Kion
Published: (2015)
by: Lee, Nung Kion
Published: (2015)
Improved ENSPART for DNA Motif Prediction
by: Choong, Allen Chieng Hoon, et al.
Published: (2017)
by: Choong, Allen Chieng Hoon, et al.
Published: (2017)
Neural Network Application in biological sequence analysis and currency prediction - Case Studies
by: Lee, Nung Kion
Published: (2014)
by: Lee, Nung Kion
Published: (2014)
SOMEA: self-organizing map based extraction algorithm for DNA motif identification with heterogeneous model
by: Lee, Nung Kion, et al.
Published: (2011)
by: Lee, Nung Kion, et al.
Published: (2011)
Generic DNA encoding design scheme to solve combinatorial problems
by: Rofilde, Hasudungan
Published: (2015)
by: Rofilde, Hasudungan
Published: (2015)
Extraction and Optimization of Fuzzy Protein Sequences Classification Rules Using GRBF Neural Networks
by: Wang, Dianhui, et al.
Published: (2003)
by: Wang, Dianhui, et al.
Published: (2003)
Protein Sequences Classification Using Modular RBF Neural Networks
by: Wang, Dianhui, et al.
Published: (2002)
by: Wang, Dianhui, et al.
Published: (2002)
Evaluation of knowledge encoded in deep neural network in the imputation of gene expression
by: Chow, Jenn Pang
Published: (2018)
by: Chow, Jenn Pang
Published: (2018)
Potential Perils of Biological Sequence Visualization using Sequence Logo
by: Lee, Nung Kion, et al.
Published: (2013)
by: Lee, Nung Kion, et al.
Published: (2013)
Computational Discovery of Motifs Using Hierarchical Clustering Techniques
by: Wang, Dianhui, et al.
Published: (2008)
by: Wang, Dianhui, et al.
Published: (2008)
Optimization of MISCORE-based Motif Identification Systems
by: Lee, Nung Kion, et al.
Published: (2009)
by: Lee, Nung Kion, et al.
Published: (2009)
Representing system by gene encoding
by: Bani Hashim, Ahmad Yusairi
Published: (2011)
by: Bani Hashim, Ahmad Yusairi
Published: (2011)
A Novel Optimized Approach for Gene Identification in DNA Sequences
by: Ahmad, Muneer, et al.
Published: (2011)
by: Ahmad, Muneer, et al.
Published: (2011)
SOMIX: Motifs Discovery in Gene Regulatory Sequences Using Self-Organizing Maps
by: Lee, Nung Kion, et al.
Published: (2010)
by: Lee, Nung Kion, et al.
Published: (2010)
Decision Making Biases in using Sequence Logo Visualization
by: Lee, Nung Kion, et al.
Published: (2012)
by: Lee, Nung Kion, et al.
Published: (2012)
MISCORE: Mismatch-Based Matrix Similarity Scores for DNA Motif Detection
by: Wang, Dianhui, et al.
Published: (2009)
by: Wang, Dianhui, et al.
Published: (2009)
Molecular cloning and sequence variations of cDNA encoding for trypsin inhibitor from kelampayan (Neolamarckia cadamba)
by: Melanie Ann, Perera
Published: (2011)
by: Melanie Ann, Perera
Published: (2011)
Run length encoding in image compression / Yusniza Yaakub
by: Yusniza, Yaakub
Published: (2004)
by: Yusniza, Yaakub
Published: (2004)
A filtering algorithm for efficient retrieving of DNA sequence
by: Abdul Rahman, Mohd Nordin, et al.
Published: (2009)
by: Abdul Rahman, Mohd Nordin, et al.
Published: (2009)
Extremal region detection and selection with fuzzy encoding for food recognition
by: Razali @ Ghazali, Mohd Norhisham
Published: (2019)
by: Razali @ Ghazali, Mohd Norhisham
Published: (2019)
A key management scheme with encoding and improved security for wireless sensor networks
by: Pathan, Al-Sakib Khan, et al.
Published: (2006)
by: Pathan, Al-Sakib Khan, et al.
Published: (2006)
Sequence Logo Visualization based on Gestalt Perception – Novices vs Experts
by: Kok, Weiying, et al.
Published: (2016)
by: Kok, Weiying, et al.
Published: (2016)
Implementation of Parallel Collection Equi-Join Using MPI
by: Lee, Nung Kion, et al.
Published: (2002)
by: Lee, Nung Kion, et al.
Published: (2002)
Block based semi-global alignment scheme for the analysis of Given DNA sequences
by: Basu, K., et al.
Published: (2006)
by: Basu, K., et al.
Published: (2006)
Encoding of facial images into illumination-invariant
spike trains
by: Hafiz , Fadhlan, et al.
Published: (2012)
by: Hafiz , Fadhlan, et al.
Published: (2012)
Augmented reslity application builder:integration of finger tracking for interaction in augmented reality system
by: Choong, Allen Chieng Hoon.
Published: (2010)
by: Choong, Allen Chieng Hoon.
Published: (2010)
Recognition of promoters in DNA sequences using weightily averaged one-dependence estimators
by: Htike@Muhammad Yusof, Zaw Zaw, et al.
Published: (2013)
by: Htike@Muhammad Yusof, Zaw Zaw, et al.
Published: (2013)
Protein Classification Using Neural Networks : A Review
by: Lee, Nung Kion, et al.
Published: (2005)
by: Lee, Nung Kion, et al.
Published: (2005)
Reversible Medical Image Watermarking for Tamper Detection and Recovery with Run Length Encoding Compression
by: Liew, Siau-Chuin, et al.
Published: (2010)
by: Liew, Siau-Chuin, et al.
Published: (2010)
Arabic language script and encoding identification with support vector machines and rough set theory
by: Mohamed Sidya, Mohamed Ould
Published: (2007)
by: Mohamed Sidya, Mohamed Ould
Published: (2007)
Ordinal reanalysis of the SHEP Trial
by: Bath, Philip M.W., et al.
Published: (2008)
by: Bath, Philip M.W., et al.
Published: (2008)
An enhanced gated recurrent unit with auto-encoder for solving text classification problems
by: Zulqarnain, Muhammad
Published: (2020)
by: Zulqarnain, Muhammad
Published: (2020)
An efficient semi-sigmoidal non-linear activation function approach for deep neural networks
by: Chieng, Hock Hung
Published: (2022)
by: Chieng, Hock Hung
Published: (2022)
db4DNASeq: An Object-oriented DNA Database Model associated with Sequence Search Method
by: Ng, Keng Hoong, et al.
Published: (2008)
by: Ng, Keng Hoong, et al.
Published: (2008)
Increasing the hiding capacity of low-bit encoding audio steganography using a novel embedding technique
by: Khalifa, Othman Omran, et al.
Published: (2012)
by: Khalifa, Othman Omran, et al.
Published: (2012)
The co-ordinative practices of temporary organisations
by: Peters, Linda D., et al.
Published: (2016)
by: Peters, Linda D., et al.
Published: (2016)
Material selection based on ordinal data
by: Jahan, Ali, et al.
Published: (2010)
by: Jahan, Ali, et al.
Published: (2010)
Similar Items
-
Evaluation of Convolutionary Neural Networks Modeling of DNA Sequences using Ordinal versus one-hot Encoding Method
by: Chieng, Allen Hoon Choong, et al.
Published: (2017) -
Filtering of Background DNA Sequences Improves DNA Motif Prediction Using Clustering Techniques
by: Lee, Nung Kion, et al.
Published: (2013) -
Data Mining for Building Neural Protein Sequence Classification Systems with Improved Performance
by: Wang, Dianhui, et al.
Published: (2003) -
MLP Neural Networks using Octave NN Package
by: Lee, Nung Kion
Published: (2015) -
Improved ENSPART for DNA Motif Prediction
by: Choong, Allen Chieng Hoon, et al.
Published: (2017)