n-cutting site of DNA splicing language for single string and palindromic rule
A new symbolization of Yusof-Goode (Y-G) splicing system was introduced by Yusof in 2012, is inspired by the framework of Formal Language Theory introduced by Head in 1987. Y-G splicing system is intended to present the biological process of DNA splicing in a translucent way. In this paper, starting...
| Main Authors: | , , |
|---|---|
| Format: | Conference or Workshop Item |
| Language: | English |
| Published: |
IOP Publishing
2022
|
| Subjects: | |
| Online Access: | http://umpir.ump.edu.my/id/eprint/36773/ http://umpir.ump.edu.my/id/eprint/36773/1/ICCGANT%20-%20PUBLISHED.pdf |
| _version_ | 1848825080535056384 |
|---|---|
| author | Nooradelena, Mohd Ruslim Yuhani, Yusof Noraziah, Adzhar |
| author_facet | Nooradelena, Mohd Ruslim Yuhani, Yusof Noraziah, Adzhar |
| author_sort | Nooradelena, Mohd Ruslim |
| building | UMP Institutional Repository |
| collection | Online Access |
| description | A new symbolization of Yusof-Goode (Y-G) splicing system was introduced by Yusof in 2012, is inspired by the framework of Formal Language Theory introduced by Head in 1987. Y-G splicing system is intended to present the biological process of DNA splicing in a translucent way. In this paper, starting with some relevant preliminaries, one theorem is proposed via Y-G approach using one initial string and one rule with different characteristics of the restriction enzyme. Additionally, the theorem showed the behavior of the splicing languages generated at single stage splicing. Two cases are considered in the theorem by conducting splicing using palindromic rule and palindromic recognition site with same left and right context for Case I and different left and right context for Case II. Furthermore, two molecular examples are discussed to validate two cases proposed in the theorem, which shows the real meaning of the theorem in biological aspect. From the proposed theorem, based on the splicing language generated, the type of splicing language can be determined. It is discovered that, the generated languages are in the form of limit and transient. |
| first_indexed | 2025-11-15T03:23:14Z |
| format | Conference or Workshop Item |
| id | ump-36773 |
| institution | Universiti Malaysia Pahang |
| institution_category | Local University |
| language | English |
| last_indexed | 2025-11-15T03:23:14Z |
| publishDate | 2022 |
| publisher | IOP Publishing |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | ump-367732023-12-19T03:00:02Z http://umpir.ump.edu.my/id/eprint/36773/ n-cutting site of DNA splicing language for single string and palindromic rule Nooradelena, Mohd Ruslim Yuhani, Yusof Noraziah, Adzhar QA Mathematics A new symbolization of Yusof-Goode (Y-G) splicing system was introduced by Yusof in 2012, is inspired by the framework of Formal Language Theory introduced by Head in 1987. Y-G splicing system is intended to present the biological process of DNA splicing in a translucent way. In this paper, starting with some relevant preliminaries, one theorem is proposed via Y-G approach using one initial string and one rule with different characteristics of the restriction enzyme. Additionally, the theorem showed the behavior of the splicing languages generated at single stage splicing. Two cases are considered in the theorem by conducting splicing using palindromic rule and palindromic recognition site with same left and right context for Case I and different left and right context for Case II. Furthermore, two molecular examples are discussed to validate two cases proposed in the theorem, which shows the real meaning of the theorem in biological aspect. From the proposed theorem, based on the splicing language generated, the type of splicing language can be determined. It is discovered that, the generated languages are in the form of limit and transient. IOP Publishing 2022-01-18 Conference or Workshop Item PeerReviewed pdf en cc_by http://umpir.ump.edu.my/id/eprint/36773/1/ICCGANT%20-%20PUBLISHED.pdf Nooradelena, Mohd Ruslim and Yuhani, Yusof and Noraziah, Adzhar (2022) n-cutting site of DNA splicing language for single string and palindromic rule. In: Journal of Physics: Conference Series; 5th International Conference on Combinatorics, Graph Theory, and Network Topology, ICCGANT 2021 , 21 - 22 August 2021 , Jember, Indonesia. pp. 1-7., 2157 (012033). ISSN 1742-6588 (print); 1742-6596 (online) (Published) https://doi.org/10.1088/1742-6596/2157/1/012033 012033 |
| spellingShingle | QA Mathematics Nooradelena, Mohd Ruslim Yuhani, Yusof Noraziah, Adzhar n-cutting site of DNA splicing language for single string and palindromic rule |
| title | n-cutting site of DNA splicing language for single string and palindromic rule |
| title_full | n-cutting site of DNA splicing language for single string and palindromic rule |
| title_fullStr | n-cutting site of DNA splicing language for single string and palindromic rule |
| title_full_unstemmed | n-cutting site of DNA splicing language for single string and palindromic rule |
| title_short | n-cutting site of DNA splicing language for single string and palindromic rule |
| title_sort | n-cutting site of dna splicing language for single string and palindromic rule |
| topic | QA Mathematics |
| url | http://umpir.ump.edu.my/id/eprint/36773/ http://umpir.ump.edu.my/id/eprint/36773/ http://umpir.ump.edu.my/id/eprint/36773/ http://umpir.ump.edu.my/id/eprint/36773/1/ICCGANT%20-%20PUBLISHED.pdf |