A Newton Cooperative Genetic Algorithm Method for In Silico Optimization of Metabolic Pathway Production
This paper presents an in silico optimization method of metabolic pathway production. The metabolic pathway can be represented by a mathematical model known as the generalized mass action model, which leads to a complex nonlinear equations system. The optimization process becomes difficult when stea...
| Main Authors: | Mohd Arfian, Ismail, Safaai, Deris, Mohd Saberi, Mohamad, Afnizanfaizal, Abdullah |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Public Library of Science
2015
|
| Subjects: | |
| Online Access: | http://umpir.ump.edu.my/id/eprint/11777/ http://umpir.ump.edu.my/id/eprint/11777/1/A%20Newton%20Cooperative%20Genetic%20Algorithm%20Method%20for%20In%20Silico%20Optimization%20of%20Metabolic%20Pathway%20Production.pdf |
Similar Items
Newton competitive genetic algorithm method for optimization the production of biochemical systems
by: Mohd Arfian, Ismail, et al.
Published: (2018)
by: Mohd Arfian, Ismail, et al.
Published: (2018)
Multi-objective Optimization of Biochemical System Production
Using an Improve Newton Competitive Differential Evolution Method
by: Mohd Arfian, Ismail, et al.
Published: (2017)
by: Mohd Arfian, Ismail, et al.
Published: (2017)
Optimisation of Biochemical Systems Production using Hybrid of Newton Method, Differential Evolution Algorithm and Cooperative Coevolution Algorithm
by: Mohd Arfian, Ismail, et al.
Published: (2017)
by: Mohd Arfian, Ismail, et al.
Published: (2017)
An improved hybrid of SVM and SCAD for pathway analysis
by: Misman, Muhammad Faiz, et al.
Published: (2011)
by: Misman, Muhammad Faiz, et al.
Published: (2011)
In silico gene knockout prediction using a hybrid of Bat algorithm and minimization of metabolic adjustment
by: Man, Mei Yen, et al.
Published: (2021)
by: Man, Mei Yen, et al.
Published: (2021)
A Hybrid of Optimization Method for Multi-Objective Constraint Optimization of Biochemical System Production
by: Mohd Arfian, Ismail, et al.
Published: (2015)
by: Mohd Arfian, Ismail, et al.
Published: (2015)
Newton competitive genetic algorithm method for optimization the production of biochemical systems
by: Ismail, Mohd Arfian, et al.
Published: (2018)
by: Ismail, Mohd Arfian, et al.
Published: (2018)
A non-dominated sorting differential search algorithm flux balance analysis (ndsDSAFBA) for in silico multiobjective optimization in identifying reactions knockout
by: Kauthar, Mohd Daud, et al.
Published: (2019)
by: Kauthar, Mohd Daud, et al.
Published: (2019)
An Improved Hybrid of Particle Swarm Optimization and the Gravitational Search Algorithm to Produce a Kinetic Parameter Estimation of Aspartate Biochemical Pathways
by: Ahmad Muhaimin, Ismail, et al.
Published: (2017)
by: Ahmad Muhaimin, Ismail, et al.
Published: (2017)
A Review on Metabolic Pathway Analysis in Biological Production
by: Lim, Sim Yi, et al.
Published: (2015)
by: Lim, Sim Yi, et al.
Published: (2015)
Optimization of biochemical systems production using combination of newton method and particle swarm optimization
by: Mohd Arfian, Ismail, et al.
Published: (2019)
by: Mohd Arfian, Ismail, et al.
Published: (2019)
Logistic Regression Methods with Truncated Newton Method
by: Jasni, Mohamad Zain, et al.
Published: (2012)
by: Jasni, Mohamad Zain, et al.
Published: (2012)
Artificial Bee Colony algorithm in estimating kinetic parameters for yeast fermentation pathway
by: Ahmad Muhaimin, Ismail, et al.
Published: (2023)
by: Ahmad Muhaimin, Ismail, et al.
Published: (2023)
A hybrid of ant colony optimization, genetic algorithm and flux balance analysis for optimization of succinic acid production in Escherichia coli
by: Tan, Jun Bin, et al.
Published: (2023)
by: Tan, Jun Bin, et al.
Published: (2023)
Hybrid multi-objective optimization methods for in silico biochemical system production
by: Mohd Arfian, Ismail
Published: (2016)
by: Mohd Arfian, Ismail
Published: (2016)
Cooperative enhanced scatter search with opposition-based learning schemes for parameter estimation in high dimensional kinetic models of biological systems
by: Muhammad Akmal, Remli, et al.
Published: (2019)
by: Muhammad Akmal, Remli, et al.
Published: (2019)
Operation sequencing using modified particle swarm optimization
by: Zakaria, Zalmiyah, et al.
Published: (2007)
by: Zakaria, Zalmiyah, et al.
Published: (2007)
Incorporating semantic similarity measure in genetic algorithm: an approach for searching the gene ontology terms
by: M. Othman, Razib, et al.
Published: (2007)
by: M. Othman, Razib, et al.
Published: (2007)
An Improved Scatter Search Algorithm for Parameter Estimation in Large-Scale Kinetic Models of Biochemical Systems
by: Muhammad Akmal, Remli, et al.
Published: (2019)
by: Muhammad Akmal, Remli, et al.
Published: (2019)
A two-stage method for identifying a smaller subset of genes in microarray data
by: Mohamad, Mohd. Saberi, et al.
Published: (2008)
by: Mohamad, Mohd. Saberi, et al.
Published: (2008)
A new binary particle swarm optimizer to select a smaller subset of genes for leukaemia cancer classification
by: Mohamad, Mohd. Saberi, et al.
Published: (2008)
by: Mohamad, Mohd. Saberi, et al.
Published: (2008)
Selecting informative genes of lung cancers by a combination of hybrid methods
by: Mohamad, Mohd. Saberi, et al.
Published: (2008)
by: Mohamad, Mohd. Saberi, et al.
Published: (2008)
A Review on the Recent Application of Jaya Optimization Algorithm
by: Alsajri, Mohammad, et al.
Published: (2019)
by: Alsajri, Mohammad, et al.
Published: (2019)
Selecting a smaller subset of informative genes from microarray data via a three-stage method
by: Mohamad, Mohd. Saberi, et al.
Published: (2008)
by: Mohamad, Mohd. Saberi, et al.
Published: (2008)
Investment portfolio optimization using genetic algorithm / Mohd Fikri Hafifi Yusof
by: Yusof, Mohd Fikri Hafifi
Published: (2007)
by: Yusof, Mohd Fikri Hafifi
Published: (2007)
A practical method for the analysis of genetic algorithms
by: Alshaikhli, Imad Fakhri Taha
Published: (2011)
by: Alshaikhli, Imad Fakhri Taha
Published: (2011)
Parameter estimation of essential amino acids in Arabidopsis thaliana using hybrid of bees algorithm and harmony search
by: Aw, Mei Yee, et al.
Published: (2019)
by: Aw, Mei Yee, et al.
Published: (2019)
Selecting informative genes from leukemia gene expression data using a hybrid approach for cancer classification
by: Mohamad, Mohd. Saberi, et al.
Published: (2007)
by: Mohamad, Mohd. Saberi, et al.
Published: (2007)
An enhancement of binary particle swarm optimization for gene selection in classifying cancer classes
by: Mohd Saberi, Mohamad, et al.
Published: (2013)
by: Mohd Saberi, Mohamad, et al.
Published: (2013)
The combination of Newton-raphson method and curve-fitting method for PWM-based inverter
by: Tohtayong, Majdee, et al.
Published: (2017)
by: Tohtayong, Majdee, et al.
Published: (2017)
The combination of Newton-Raphson method and curve-fitting method for PWM-based inverter
by: Tohtayong, Majdee, et al.
Published: (2017)
by: Tohtayong, Majdee, et al.
Published: (2017)
A cooperative learning model for the fuzzy ARTMAP-dynamic decay adjustment network with the genetic algorithm
by: Tan, Shing Chiang, et al.
Published: (2007)
by: Tan, Shing Chiang, et al.
Published: (2007)
Gene subset selection for lung cancer classification using a multi-objective strategy
by: Mohamad, Mohd. Saberi, et al.
Published: (2008)
by: Mohamad, Mohd. Saberi, et al.
Published: (2008)
Automatic clustering of gene ontology by genetic algorithm
by: Othman, Razib M., et al.
Published: (2006)
by: Othman, Razib M., et al.
Published: (2006)
A hybrid of Cuckoo Search and Minimization of Metabolic Adjustment to optimize metabolites production in genome-scale models
by: Muhammad Azharuddin, Arif, et al.
Published: (2018)
by: Muhammad Azharuddin, Arif, et al.
Published: (2018)
The fusion of particle swarm optimization (PSO) and interior point method (IPM) as cooperative movement control algorithm in Swarm Robotics / Dada Emmanuel Gbenga
by: Dada Emmanuel, Gbenga
Published: (2016)
by: Dada Emmanuel, Gbenga
Published: (2016)
A GPU accelerated parallel genetic algorithm for the traveling salesman problem
by: Binjubier, Mohammed, et al.
Published: (2024)
by: Binjubier, Mohammed, et al.
Published: (2024)
Attribute related methods for improvement of ID3 Algorithm in classification of data: A review
by: Nur Farahaina, Idris, et al.
Published: (2020)
by: Nur Farahaina, Idris, et al.
Published: (2020)
A non-dominated sorting Differential Search Algorithm Flux Balance Analysis (ndsDSAFBA) for in silico multiobjective optimization in identifying reactions knockout
by: Mohd Daud, Kauthar, et al.
Published: (2019)
by: Mohd Daud, Kauthar, et al.
Published: (2019)
Biological-based semi-supervised clustering algorithm to improve gene function prediction
by: Kasim, Shahreen, et al.
Published: (2011)
by: Kasim, Shahreen, et al.
Published: (2011)
Similar Items
-
Newton competitive genetic algorithm method for optimization the production of biochemical systems
by: Mohd Arfian, Ismail, et al.
Published: (2018) -
Multi-objective Optimization of Biochemical System Production
Using an Improve Newton Competitive Differential Evolution Method
by: Mohd Arfian, Ismail, et al.
Published: (2017) -
Optimisation of Biochemical Systems Production using Hybrid of Newton Method, Differential Evolution Algorithm and Cooperative Coevolution Algorithm
by: Mohd Arfian, Ismail, et al.
Published: (2017) -
An improved hybrid of SVM and SCAD for pathway analysis
by: Misman, Muhammad Faiz, et al.
Published: (2011) -
In silico gene knockout prediction using a hybrid of Bat algorithm and minimization of metabolic adjustment
by: Man, Mei Yen, et al.
Published: (2021)