The efficacy of alignment-based and alignment-free methods in reconstructing phylogenetic trees using complete mitochondrial DNA sequence / Elham Yousef Kalafi

QR Code

The efficacy of alignment-based and alignment-free methods in reconstructing phylogenetic trees using complete mitochondrial DNA sequence / Elham Yousef Kalafi

Similarity searching tools are generally divided to two distinct groups: Alignment-based and alignment-free methods. There is no standard comparison between alignment-based and alignment-free methods` performance. In this project, I compared CLUSTALW, T-COFFEE and MUSCLE algorithms with four alignme...

Full description

Bibliographic Details
Main Author:	Kalafi, Elham Yousef
Format:	Thesis
Published:	2012
Subjects:	QH301 Biology
Online Access:	http://pendeta.um.edu.my/client/default/search/results?qu=The+efficacy+of+alignment-based+and+alignment-free+methods+in+reconstructing+phylogenetic+trees+using+complete+mitochondrial+DNA+sequence&te= http://studentsrepo.um.edu.my/3843/1/abstract%2C_content.pdf http://studentsrepo.um.edu.my/3843/2/Chap1_Intro%2C_Chap2_Lit_review.pdf http://studentsrepo.um.edu.my/3843/3/Chap_3_Methods_and_Materials.pdf http://studentsrepo.um.edu.my/3843/4/Chap4_Result%2C_Chap5Discussion%2C_Chap6_Conclusion.pdf http://studentsrepo.um.edu.my/3843/5/References.pdf

Similar Items

The development of automated identification system for selected species of monogeneans using digital image processing, K-nearest neighbour and artificial neural network approaches / Elham Yousef Kalafi
by: Elham Yousef, Kalafi
Published: (2017)

Block based semi-global alignment scheme for the analysis of Given DNA sequences
by: Basu, K., et al.
Published: (2006)

Phylogenetics of sea cucumbers in Malaysia based on Mitochondrial DNA
by: Ahmad, Hajar Fauzan, et al.
Published: (2008)

A Pattern Matching Approach for the Estimation of Alignment Between Any Two Given DNA Sequences
by: Basu, K., et al.
Published: (2007)

The characterization and maternal phylogenetic analysis of complete mitochondrial genome of the native bian chicken
by: Bai, Hai, et al.
Published: (2024)

Alignment and Alignment Transition of Bent Core Nematics
by: Hegde, Gurumurthy, et al.
Published: (2013)

Study And Evaluation Of Alignment Algorithms For Biological Sequence Analysis
by: Basu, Kaustubh
Published: (2007)

Comparison and evaluation of multiple sequence alignment tools in bininformatics
by: Sedaghatinia, Asieh, et al.
Published: (2009)

An Enhanced Flower Pollination Algorithm For Multiple Sequence Alignment
by: Hussein, Ahmad Moh’d Aziz Issa
Published: (2020)

Molecular phylogenetics and phylogeography of Malaysian mousedeer (Tragulus kanchil) based on mitochondrial DNA sequences of the D-Loop region
by: Mohamad Azam Akmal Abu-Bakar,, et al.
Published: (2024)

Grid portal for bioinformatics sequences alignment applications / Azlan Arifin
by: Azlan , Arifin
Published: (2008)

Prediction Of Antimicrobial Peptides Based On Sequence Alignment And Secondary Structure Sequence And Segment Sequence.pdf
by: Soh , Meng Wah
Published: (2015)

Does Employee Alignment Affect Business-IT Alignment? An Empirical Analysis
by: Chong, Alain Yee Loong, et al.
Published: (2011)

Phylogenetic relationship of terubok fishes (Genus Tenualosa: clupeidae) inferred from sequencing of ytochrome B mitochondrial DNA fragment
by: Nadiah, Binti Halim
Published: (2012)

Phylogenetic analysis of Hampala fishes (subfamily cyprininae) in Malaysia inferred from partial mitochondrial cytochrome b DNA sequences.
by: Ryan, Jeffrine Rovie
Published: (2006)

Phylogenetic relationship of terubok fishes (Genus Tenualosa: clupeidae) inferred from sequencing of cytochrome B mitochondrial DNA fragment
by: Nadiah, Binti Halim
Published: (2012)

Mitochondrial DNA Polymorphism and Phylogenetic relationships of proto Malays in Peninsular Malaysia
by: Lim, L.S, et al.
Published: (2010)

Phylogenetic relationship of several indigenous freshwater fishes in Sarawak inferred from partial sequencing of Cytochrome b Mitochondrial DNA (MtDNA) gene
by: Esa, Yuzine, et al.
Published: (2003)

Complete mitochondrial genome sequence of the Indian pipistrelle Pipistrellus coromandra (Vespertilioninae)
by: Rahman, Md. Mafizur, et al.
Published: (2016)

Phylogenetic relationships of Malaysian monkeys, Cercopithecidae, based on mitochondrial cytochrome c sequences
by: Md-Zain, B.M., et al.
Published: (2010)

A study on biomolecular sequence alignment using machine learning techniques
by: Othman, Muhamad Razib, et al.
Published: (2004)

Phylogenetic relationships of Ansonia from Southeast Asia inferred from mitochondrial DNA sequences: Systematic and biogeographic implications (Anura : Bufonidae)
by: Das, I.
Published: (2010)

Should goodwill be amortised? Empirical evidence from UAE / Yousef Shahwan
by: Shahwan, Yousef
Published: (2005)

A trust model for advisor networks in multi-agent environments / Elham Majd
by: Majd, Elham
Published: (2015)

Metadiscourse in dentistry research articles published in international and Iranian journals / Elham Basiratesfahani
by: Elham , Basiratesfahani
Published: (2018)

EPT and the CEFR: are they aligned?
by: Engku Ibrahim, Engku Haliza, et al.
Published: (2019)

Posthumanism and feminist theology in selected texts of octavia butler / Elham Mohammadi Achachelooei
by: Elham Mohammadi , Achachelooei
Published: (2016)

The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position
by: Wong, Xue Jing, et al.
Published: (2022)

Characterization of alignment strategy to achieve a reliable alignment accuracy in advanced lithography
by: Normah Ahmad,, et al.
Published: (2007)

Effect of radiocesium on mitochondrial DNA sequence in masu salmon
by: Yusof, Muhammad Fitri, et al.
Published: (2017)

Communication strategies in social interaction between Arab and Iranian postgraduate students / Elham Shahban.
by: Shahban, Elham
Published: (2010)

Multiresidue determination of pesticides in olive and palm oil by LC-QTOF-MS / Elham Sobhanzadeh
by: Sobhanzadeh, Elham
Published: (2011)

Phylogenetic relationships among Mahseers (Cyprindae) in Malaysia inferred from Sequencing of a cytochrome c oxidase I (COI) Mitochondrial DNA (mtDNA) segment
by: Esa, Yuzine, et al.
Published: (2007)

Phylogenetic relationships among several freshwater fishes (Family: Cyprinidae) in Malaysia inferred from partial sequencing of the Cytochrome b mitochondrial DNA (mtDNA) gene
by: Esa, Yuzine, et al.
Published: (2012)

A Review of Recent Alignment-Free Clustering Algorithms in Expressed Sequence Tag
by: Ng, Keng-Hoong, et al.
Published: (2009)

A smith-waterman local sequence alignment approach to spatial activity recognition
by: Riedel, Daniel, et al.
Published: (2006)

Some aspects of physico-chemical properties of chitosan in solutions and films / Elham S. Meftah Elgannoudi
by: Elgannoudi, Elham S. Meftah
Published: (2009)

Molecular phylogenetics of selected Clarias spp. inferred from mitochondrial DNA and nuclear genes
by: Othman, Nor Hasnita
Published: (2012)

Business-IT Alignment through Enterprise Architecture in a Strategic Alignment Dimension: A Review
by: Yoppy Mirza, Maulana, et al.
Published: (2023)

The complete mitochondrial genome of an agamid lizard from the Afro? Asian subfamily agaminae and the phylogenetic position of Bufoniceps and Xenagama
by: Macey, J. Robert, et al.
Published: (2006)