DNA charge neutralisation by linear polymers I: irreversible binding
We develop a deterministic mathematical model to describe the way in which polymers bind to DNA by considering the dynamics of the gap distribution that forms when polymers bind to a DNA plasmid. In so doing, we generalise existing theory to account for overlaps and binding cooperativity whereby...
| Main Authors: | , , |
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| Format: | Article |
| Published: |
2006
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| Online Access: | https://eprints.nottingham.ac.uk/935/ |
| _version_ | 1848790506253844480 |
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| author | Maltsev, Eugene Wattis, Jonathan A.D. Byrne, Helen M. |
| author_facet | Maltsev, Eugene Wattis, Jonathan A.D. Byrne, Helen M. |
| author_sort | Maltsev, Eugene |
| building | Nottingham Research Data Repository |
| collection | Online Access |
| description | We develop a deterministic mathematical model to describe the way
in which polymers bind to DNA by considering the dynamics of the
gap distribution that forms when polymers bind to a DNA plasmid.
In so doing, we generalise existing theory to account for overlaps
and binding cooperativity whereby the polymer binding rate depends
on the size of the overlap The proposed mean-field models are then
solved using a combination of numerical and asymptotic methods. We
find that overlaps lead to higher coverage and hence higher charge
neutralisations, results which are more in line with recent
experimental observations. Our work has applications to gene
therapy where polymers are used to neutralise the negative charges
of the DNA phosphate backbone, allowing condensation prior to
delivery into the nucleus of an abnormal cell. |
| first_indexed | 2025-11-14T18:13:42Z |
| format | Article |
| id | nottingham-935 |
| institution | University of Nottingham Malaysia Campus |
| institution_category | Local University |
| last_indexed | 2025-11-14T18:13:42Z |
| publishDate | 2006 |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | nottingham-9352020-05-04T20:30:07Z https://eprints.nottingham.ac.uk/935/ DNA charge neutralisation by linear polymers I: irreversible binding Maltsev, Eugene Wattis, Jonathan A.D. Byrne, Helen M. We develop a deterministic mathematical model to describe the way in which polymers bind to DNA by considering the dynamics of the gap distribution that forms when polymers bind to a DNA plasmid. In so doing, we generalise existing theory to account for overlaps and binding cooperativity whereby the polymer binding rate depends on the size of the overlap The proposed mean-field models are then solved using a combination of numerical and asymptotic methods. We find that overlaps lead to higher coverage and hence higher charge neutralisations, results which are more in line with recent experimental observations. Our work has applications to gene therapy where polymers are used to neutralise the negative charges of the DNA phosphate backbone, allowing condensation prior to delivery into the nucleus of an abnormal cell. 2006 Article PeerReviewed Maltsev, Eugene, Wattis, Jonathan A.D. and Byrne, Helen M. (2006) DNA charge neutralisation by linear polymers I: irreversible binding. Physical Review E, 74 . 011904. ISSN 1539-3755 http://pre.aps.org/browse |
| spellingShingle | Maltsev, Eugene Wattis, Jonathan A.D. Byrne, Helen M. DNA charge neutralisation by linear polymers I: irreversible binding |
| title | DNA charge neutralisation by linear polymers I: irreversible binding |
| title_full | DNA charge neutralisation by linear polymers I: irreversible binding |
| title_fullStr | DNA charge neutralisation by linear polymers I: irreversible binding |
| title_full_unstemmed | DNA charge neutralisation by linear polymers I: irreversible binding |
| title_short | DNA charge neutralisation by linear polymers I: irreversible binding |
| title_sort | dna charge neutralisation by linear polymers i: irreversible binding |
| url | https://eprints.nottingham.ac.uk/935/ https://eprints.nottingham.ac.uk/935/ |