Infobiotics workbench: a P systems based tool for systems and synthetic biology
This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel spatial discrete-stochastic P systems modelling framework. The Workbench incorporates three important features, simulation, model checking and optimisation. Its capability for buildin...
| Main Authors: | , , , , , |
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| Format: | Book Section |
| Published: |
Springer International Publishing
2014
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| Online Access: | https://eprints.nottingham.ac.uk/46465/ |
| _version_ | 1848797333001601024 |
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| author | Blakes, Jonathan Twycross, Jamie Konur, Savas Romero-Campero, Francisco Jose Krasnogor, Natalio Gheorghe, Marian |
| author_facet | Blakes, Jonathan Twycross, Jamie Konur, Savas Romero-Campero, Francisco Jose Krasnogor, Natalio Gheorghe, Marian |
| author_sort | Blakes, Jonathan |
| building | Nottingham Research Data Repository |
| collection | Online Access |
| description | This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel spatial discrete-stochastic P systems modelling framework. The Workbench incorporates three important features, simulation, model checking and optimisation. Its capability for building, analysing and optimising large spatially discrete and stochastic models of multicellular systems makes it a useful, coherent and comprehensive in silico tool in systems and synthetic biology research. |
| first_indexed | 2025-11-14T20:02:12Z |
| format | Book Section |
| id | nottingham-46465 |
| institution | University of Nottingham Malaysia Campus |
| institution_category | Local University |
| last_indexed | 2025-11-14T20:02:12Z |
| publishDate | 2014 |
| publisher | Springer International Publishing |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | nottingham-464652020-05-04T16:41:34Z https://eprints.nottingham.ac.uk/46465/ Infobiotics workbench: a P systems based tool for systems and synthetic biology Blakes, Jonathan Twycross, Jamie Konur, Savas Romero-Campero, Francisco Jose Krasnogor, Natalio Gheorghe, Marian This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel spatial discrete-stochastic P systems modelling framework. The Workbench incorporates three important features, simulation, model checking and optimisation. Its capability for building, analysing and optimising large spatially discrete and stochastic models of multicellular systems makes it a useful, coherent and comprehensive in silico tool in systems and synthetic biology research. Springer International Publishing 2014-01-17 Book Section PeerReviewed Blakes, Jonathan, Twycross, Jamie, Konur, Savas, Romero-Campero, Francisco Jose, Krasnogor, Natalio and Gheorghe, Marian (2014) Infobiotics workbench: a P systems based tool for systems and synthetic biology. In: Applications of membrane computing in systems and synthetic biology. Emergence, complexity and computation (7). Springer International Publishing, Cham, pp. 1-41. ISBN 978-3-319-03191-0 https://link.springer.com/chapter/10.1007/978-3-319-03191-0_1 doi:10.1007/978-3-319-03191-0_1 doi:10.1007/978-3-319-03191-0_1 |
| spellingShingle | Blakes, Jonathan Twycross, Jamie Konur, Savas Romero-Campero, Francisco Jose Krasnogor, Natalio Gheorghe, Marian Infobiotics workbench: a P systems based tool for systems and synthetic biology |
| title | Infobiotics workbench: a P systems based tool for systems and synthetic biology |
| title_full | Infobiotics workbench: a P systems based tool for systems and synthetic biology |
| title_fullStr | Infobiotics workbench: a P systems based tool for systems and synthetic biology |
| title_full_unstemmed | Infobiotics workbench: a P systems based tool for systems and synthetic biology |
| title_short | Infobiotics workbench: a P systems based tool for systems and synthetic biology |
| title_sort | infobiotics workbench: a p systems based tool for systems and synthetic biology |
| url | https://eprints.nottingham.ac.uk/46465/ https://eprints.nottingham.ac.uk/46465/ https://eprints.nottingham.ac.uk/46465/ |