Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply
Breeding crops with ideal root system architecture for efficient absorption of phosphorus is an important strategy to reduce the use of phosphate fertilizers. To investigate genetic variants leading to changes in root system architecture, 405 oilseed rape cultivars were genotyped with a 60K Brassica...
| Main Authors: | , , , , , , , , , , , , |
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| Format: | Article |
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Oxford University Press
2017
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| Online Access: | https://eprints.nottingham.ac.uk/43766/ |
| _version_ | 1848796763753807872 |
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| author | Wang, Xiaohua Chen, Yanling Thomas, Catherine L. Ding, Guangda Xu, Ping Shi, Dexu Grandke, Fabian Jin, Kemo Cai, Hongmei Xu, Fangsen Yi, Bin Broadley, Martin R. Shi, Lei |
| author_facet | Wang, Xiaohua Chen, Yanling Thomas, Catherine L. Ding, Guangda Xu, Ping Shi, Dexu Grandke, Fabian Jin, Kemo Cai, Hongmei Xu, Fangsen Yi, Bin Broadley, Martin R. Shi, Lei |
| author_sort | Wang, Xiaohua |
| building | Nottingham Research Data Repository |
| collection | Online Access |
| description | Breeding crops with ideal root system architecture for efficient absorption of phosphorus is an important strategy to reduce the use of phosphate fertilizers. To investigate genetic variants leading to changes in root system architecture, 405 oilseed rape cultivars were genotyped with a 60K Brassica Infinium SNP array in low and high P environments. A total of 285 single-nucleotide polymorphisms were associated with root system architecture traits at varying phosphorus levels. Nine single-nucleotide polymorphisms corroborate a previous linkage analysis of root system architecture quantitative trait loci in the BnaTNDH population. One peak single-nucleotide polymorphism region on A3 was associated with all root system architecture traits and co-localized with a quantitative trait locus for primary root length at low phosphorus. Two more single-nucleotide polymorphism peaks on A5 for root dry weight at low phosphorus were detected in both growth systems and co-localized with a quantitative trait locus for the same trait. The candidate genes identified on A3 form a haplotype ‘BnA3Hap’, that will be important for understanding the phosphorus/root system interaction and for the incorporation into Brassica napus breeding programs. |
| first_indexed | 2025-11-14T19:53:09Z |
| format | Article |
| id | nottingham-43766 |
| institution | University of Nottingham Malaysia Campus |
| institution_category | Local University |
| last_indexed | 2025-11-14T19:53:09Z |
| publishDate | 2017 |
| publisher | Oxford University Press |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | nottingham-437662020-05-04T18:42:39Z https://eprints.nottingham.ac.uk/43766/ Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply Wang, Xiaohua Chen, Yanling Thomas, Catherine L. Ding, Guangda Xu, Ping Shi, Dexu Grandke, Fabian Jin, Kemo Cai, Hongmei Xu, Fangsen Yi, Bin Broadley, Martin R. Shi, Lei Breeding crops with ideal root system architecture for efficient absorption of phosphorus is an important strategy to reduce the use of phosphate fertilizers. To investigate genetic variants leading to changes in root system architecture, 405 oilseed rape cultivars were genotyped with a 60K Brassica Infinium SNP array in low and high P environments. A total of 285 single-nucleotide polymorphisms were associated with root system architecture traits at varying phosphorus levels. Nine single-nucleotide polymorphisms corroborate a previous linkage analysis of root system architecture quantitative trait loci in the BnaTNDH population. One peak single-nucleotide polymorphism region on A3 was associated with all root system architecture traits and co-localized with a quantitative trait locus for primary root length at low phosphorus. Two more single-nucleotide polymorphism peaks on A5 for root dry weight at low phosphorus were detected in both growth systems and co-localized with a quantitative trait locus for the same trait. The candidate genes identified on A3 form a haplotype ‘BnA3Hap’, that will be important for understanding the phosphorus/root system interaction and for the incorporation into Brassica napus breeding programs. Oxford University Press 2017-04-19 Article PeerReviewed Wang, Xiaohua, Chen, Yanling, Thomas, Catherine L., Ding, Guangda, Xu, Ping, Shi, Dexu, Grandke, Fabian, Jin, Kemo, Cai, Hongmei, Xu, Fangsen, Yi, Bin, Broadley, Martin R. and Shi, Lei (2017) Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply. DNA Research . ISSN 1756-1663 oilseed rape root system architecture single-nucleotide polymorphism genome-wide association study BnA3Hap https://academic.oup.com/dnaresearch/article-lookup/doi/10.1093/dnares/dsx013 doi:10.1093/dnares/dsx013 doi:10.1093/dnares/dsx013 |
| spellingShingle | oilseed rape root system architecture single-nucleotide polymorphism genome-wide association study BnA3Hap Wang, Xiaohua Chen, Yanling Thomas, Catherine L. Ding, Guangda Xu, Ping Shi, Dexu Grandke, Fabian Jin, Kemo Cai, Hongmei Xu, Fangsen Yi, Bin Broadley, Martin R. Shi, Lei Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply |
| title | Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply |
| title_full | Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply |
| title_fullStr | Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply |
| title_full_unstemmed | Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply |
| title_short | Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply |
| title_sort | genetic variants associated with the root system architecture of oilseed rape (brassica napus l.) under contrasting phosphate supply |
| topic | oilseed rape root system architecture single-nucleotide polymorphism genome-wide association study BnA3Hap |
| url | https://eprints.nottingham.ac.uk/43766/ https://eprints.nottingham.ac.uk/43766/ https://eprints.nottingham.ac.uk/43766/ |