Reconstructing transmission trees for communicable diseases using densely sampled genetic data

QR Code

Reconstructing transmission trees for communicable diseases using densely sampled genetic data

Whole genome sequencing of pathogens from multiple hosts in an epidemic offers the potential to investigate who infected whom with unparalleled resolution, potentially yielding important insights into disease dynamics and the impact of control measures. We considered disease outbreaks in a setting w...

Full description

Bibliographic Details
Main Authors:	Worby, Colin J., O'Neill, Philip D., Kypraios, Theodore, Robotham, Julie V., De Angelis, Daniela, Cartwright, Edward J.P., Peacock, Sharon J., Cooper, Ben S.
Format:	Article
Published:	Institute of Mathematical Statistics 2016
Subjects:	Bayesian inference Infectious disease Epidemics Outbreak investigation Transmission routes
Online Access:	https://eprints.nottingham.ac.uk/42771/

Similar Items

A tutorial introduction to Bayesian inference for stochastic epidemic models using Approximate Bayesian Computation
by: Kypraios, Theodore, et al.
Published: (2017)

Modelling and Bayesian analysis of the Abakaliki smallpox data
by: Stockdale, Jessica E., et al.
Published: (2017)

Bayesian nonparametrics for stochastic epidemic models
by: Kypraios, Theodore, et al.
Published: (2018)

Topics in Bayesian inference and model assessment for partially observed stochastic epidemic models
by: Aristotelous, Georgios
Published: (2020)

Bayesian Inference for Stochastic Epidemic Models using Markov chain Monte Carlo Methods
by: Demiris, Nikolaos
Published: (2004)

Bayesian nonparametric methods for individual-level stochastic epidemic models
by: Seymour, Rowland G.
Published: (2020)

Exact Bayesian inference for the Bingham distribution
by: Fallaize, Christopher J., et al.
Published: (2016)

Bayesian nonparametric inference for stochastic epidemic models
by: Xu, Xiaoguang
Published: (2015)

Declarative modelling for Bayesian inference by shallow embedding
by: Nilsson, Henrik, et al.
Published: (2014)

Generalisation of prior information for rapid Bayesian time estimation
by: Roach, Neil, et al.
Published: (2016)

GARCH dependence in extreme value models with Bayesian inference
by: Zhao, X., et al.
Published: (2011)

Efficient SMC2 schemes for stochastic kinetic models
by: Golightly, Andrew, et al.
Published: (2017)

Estimating matrix travel light vehicle observations by volume sleeve approach inference bayes
by: Abusini, Sobri, et al.
Published: (2016)

Models and methods to integrate epidemiological and whole genome sequence data for effectively analysing infectious disease outbreak data
by: Marsh, J. S.
Published: (2024)

On noise, uncertainty and inference for computational diffusion MRI
by: Manzano Patron, Jose Pedro
Published: (2023)

A modelling approach to estimate the transmissibility of SARS-CoV 2 during periods of high, low, and zero case incidence
by: Golding, Nick, et al.
Published: (2023)

New mathematical approaches to the quantification of uncertainty affecting the measurement of U-value
by: De Simon, Lia
Published: (2017)

Mitigating Model Misspecification with Variational Bayesian Inference
by: Krissaane, Ines
Published: (2024)

SIR epidemics in a population of households
by: Shaw, Laurence M.
Published: (2016)

Estimating the within-household infection rate in emerging SIR epidemics among a community of households
by: Ball, Frank, et al.
Published: (2015)

Inferring R0 in emerging epidemics: the effect of common population structure is small
by: Trapman, Pieter, et al.
Published: (2016)

Concepts of infectious, contagious, and epidemic disease in Anglo-Saxon England
by: Künzel, Stefanie
Published: (2018)

The first recorded outbreak of cryptosporidiosis due to Cryptosporidium cuniculus (formerly rabbit genotype), following a water quality incident
by: Puleston, Richard L., et al.
Published: (2014)

Bayesian edge-detection in image processing
by: Stephens, David A.
Published: (1990)

A novel fault detection and diagnostic petri net methodology for dynamic systems
by: Badmus, Taofeeq Alabi
Published: (2025)

On the epidemic of financial crises
by: Demiris, Nikolaos, et al.
Published: (2014)

Piecewise Approximate Bayesian Computation: fast inference for discretely observed Markov models using a factorised posterior distribution
by: White, S.R., et al.
Published: (2015)

Estimation of parameters in mean-reverting stochastic systems
by: Tian, T., et al.
Published: (2014)

Pelajar UPM maut, tiga rakan parah dalam nahas
by: Berita Harian,
Published: (2003)

The deterministic Kermack-McKendrick model bounds the general stochastic epidemic
by: Wilkinson, Robert R., et al.
Published: (2016)

Reservoir Inflow Forecasting Using Artificial Neural Network and Adaptive Neuro-Fuzzy Inference System Techniques
by: Googhari, Shahram Karimi
Published: (2007)

Utilizing general human movement models to predict the spread of emerging infectious diseases in resource poor settings
by: Kraemer, M.U.G., et al.
Published: (2019)

Effect of aspirin on cancer incidence and mortality in older adults.
by: McNeil, John J, et al.
Published: (2020)

Interrogative elements and verb-noun ranking for criminal chatting forensics
by: Marjuni, Siti Hanom
Published: (2011)

Stochastic epidemic models for emerging diseases
by: Spencer, Simon
Published: (2008)

Randomized placebo-controlled trial of the effects of aspirin on dementia and cognitive decline.
by: Ryan, Joanne, et al.
Published: (2020)

Kalman-like Inversion with ODE/SDE Formulations and Adaptive Algorithms
by: Yang, Yuchen
Published: (2020)

A Geophysical Investigation of Shallow Deformation Along an Anomalous Section of the Wasatch Fault Zone, Utah, USA
by: McBride, J., et al.
Published: (2008)

Uncertainty quantification in palaeoclimate reconstruction
by: Carson, J.
Published: (2015)

A rare event approach to high-dimensional approximate Bayesian computation
by: Prangle, Dennis, et al.
Published: (2017)