Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida
Petunia hybrida is a popular bedding plant that has a long history as a genetic model system. We report the whole-genome sequencing and assembly of inbred derivatives of its two wild parents, P. axillaris N and P. inflata S6. The current assemblies include 91.3% and 90.2% coverage of their diploid g...
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| Format: | Article |
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Nature Publishing Group
2016
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| Online Access: | https://eprints.nottingham.ac.uk/38550/ |
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| author | Bombarely, Aureliano Moser, Michel Amrad, Avichai Bao, Manzhu Bapaume, Laure Barry, Cornelius S. Bliek, Mattijs Boersma, Maaike R. Borghi, Lorenzo Bruggmann, Rémy Bucher, Marcel D'Agostino, Nunzio Davies, Kevin Druege, Uwe Dudareva, Natalia Egea-Cortines, Marcos Delledonne, Massimo Fernandez-Pozo, Noe Franken, Philipp Grandont, Laurie Heslop-Harrison, J. S. Hintzsche, Jennifer Johns, Mitrick Koes, Ronald Lv, Xiaodan Lyons, Eric Malla, Diwa Martinoia, Enrico Mattson, Neil S. Morel, Patrice Mueller, Lukas A. Muhlemann, Joëlle Nouri, Eva Passeri, Valentina Pezzotti, Mario Qi, Qinzhou Reinhardt, Didier Rich, Melanie Richert-Pöggeler, Katja R. Robbins, Tim P. Schatz, Michael C. Schranz, M. Eric Schuurink, Robert C. Schwarzacher, Trude Spelt, Kees Tang, Haibao Urbanus, Susan L. Vandenbussche, Michiel Vijverberg, Kitty Villarino, Gonzalo H. Warner, Ryan M. Weiss, Julia Yue, Zhen Zethof, Jan Quattrocchio, Francesca Sims, Thomas L. Kuhlemeier, Cris |
| author_facet | Bombarely, Aureliano Moser, Michel Amrad, Avichai Bao, Manzhu Bapaume, Laure Barry, Cornelius S. Bliek, Mattijs Boersma, Maaike R. Borghi, Lorenzo Bruggmann, Rémy Bucher, Marcel D'Agostino, Nunzio Davies, Kevin Druege, Uwe Dudareva, Natalia Egea-Cortines, Marcos Delledonne, Massimo Fernandez-Pozo, Noe Franken, Philipp Grandont, Laurie Heslop-Harrison, J. S. Hintzsche, Jennifer Johns, Mitrick Koes, Ronald Lv, Xiaodan Lyons, Eric Malla, Diwa Martinoia, Enrico Mattson, Neil S. Morel, Patrice Mueller, Lukas A. Muhlemann, Joëlle Nouri, Eva Passeri, Valentina Pezzotti, Mario Qi, Qinzhou Reinhardt, Didier Rich, Melanie Richert-Pöggeler, Katja R. Robbins, Tim P. Schatz, Michael C. Schranz, M. Eric Schuurink, Robert C. Schwarzacher, Trude Spelt, Kees Tang, Haibao Urbanus, Susan L. Vandenbussche, Michiel Vijverberg, Kitty Villarino, Gonzalo H. Warner, Ryan M. Weiss, Julia Yue, Zhen Zethof, Jan Quattrocchio, Francesca Sims, Thomas L. Kuhlemeier, Cris |
| author_sort | Bombarely, Aureliano |
| building | Nottingham Research Data Repository |
| collection | Online Access |
| description | Petunia hybrida is a popular bedding plant that has a long history as a genetic model system. We report the whole-genome sequencing and assembly of inbred derivatives of its two wild parents, P. axillaris N and P. inflata S6. The current assemblies include 91.3% and 90.2% coverage of their diploid genomes (1.4 Gb; 2n=14) containing 32,928 and 36,697 protein-coding genes, respectively. The Petunia lineage has experienced at least two rounds of paleohexaploidization, the older gamma hexaploidy event, which is shared with other Eudicots, and the more recent Solanaceae paleohexaploidy event that is shared with tomato and other Solanaceae species. Transcription factors that were targets of selection during the shift from bee- to moth pollination reside in particularly dynamic regions of the genome, which may have been key to the remarkable diversity of floral color patterns and pollination systems. The high quality genome sequences will enhance the value of Petunia as a model system for basic and applied research on a variety of unique biological phenomena. |
| first_indexed | 2025-11-14T19:35:16Z |
| format | Article |
| id | nottingham-38550 |
| institution | University of Nottingham Malaysia Campus |
| institution_category | Local University |
| last_indexed | 2025-11-14T19:35:16Z |
| publishDate | 2016 |
| publisher | Nature Publishing Group |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | nottingham-385502020-05-04T17:49:48Z https://eprints.nottingham.ac.uk/38550/ Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida Bombarely, Aureliano Moser, Michel Amrad, Avichai Bao, Manzhu Bapaume, Laure Barry, Cornelius S. Bliek, Mattijs Boersma, Maaike R. Borghi, Lorenzo Bruggmann, Rémy Bucher, Marcel D'Agostino, Nunzio Davies, Kevin Druege, Uwe Dudareva, Natalia Egea-Cortines, Marcos Delledonne, Massimo Fernandez-Pozo, Noe Franken, Philipp Grandont, Laurie Heslop-Harrison, J. S. Hintzsche, Jennifer Johns, Mitrick Koes, Ronald Lv, Xiaodan Lyons, Eric Malla, Diwa Martinoia, Enrico Mattson, Neil S. Morel, Patrice Mueller, Lukas A. Muhlemann, Joëlle Nouri, Eva Passeri, Valentina Pezzotti, Mario Qi, Qinzhou Reinhardt, Didier Rich, Melanie Richert-Pöggeler, Katja R. Robbins, Tim P. Schatz, Michael C. Schranz, M. Eric Schuurink, Robert C. Schwarzacher, Trude Spelt, Kees Tang, Haibao Urbanus, Susan L. Vandenbussche, Michiel Vijverberg, Kitty Villarino, Gonzalo H. Warner, Ryan M. Weiss, Julia Yue, Zhen Zethof, Jan Quattrocchio, Francesca Sims, Thomas L. Kuhlemeier, Cris Petunia hybrida is a popular bedding plant that has a long history as a genetic model system. We report the whole-genome sequencing and assembly of inbred derivatives of its two wild parents, P. axillaris N and P. inflata S6. The current assemblies include 91.3% and 90.2% coverage of their diploid genomes (1.4 Gb; 2n=14) containing 32,928 and 36,697 protein-coding genes, respectively. The Petunia lineage has experienced at least two rounds of paleohexaploidization, the older gamma hexaploidy event, which is shared with other Eudicots, and the more recent Solanaceae paleohexaploidy event that is shared with tomato and other Solanaceae species. Transcription factors that were targets of selection during the shift from bee- to moth pollination reside in particularly dynamic regions of the genome, which may have been key to the remarkable diversity of floral color patterns and pollination systems. The high quality genome sequences will enhance the value of Petunia as a model system for basic and applied research on a variety of unique biological phenomena. Nature Publishing Group 2016-05-27 Article PeerReviewed Bombarely, Aureliano, Moser, Michel, Amrad, Avichai, Bao, Manzhu, Bapaume, Laure, Barry, Cornelius S., Bliek, Mattijs, Boersma, Maaike R., Borghi, Lorenzo, Bruggmann, Rémy, Bucher, Marcel, D'Agostino, Nunzio, Davies, Kevin, Druege, Uwe, Dudareva, Natalia, Egea-Cortines, Marcos, Delledonne, Massimo, Fernandez-Pozo, Noe, Franken, Philipp, Grandont, Laurie, Heslop-Harrison, J. S., Hintzsche, Jennifer, Johns, Mitrick, Koes, Ronald, Lv, Xiaodan, Lyons, Eric, Malla, Diwa, Martinoia, Enrico, Mattson, Neil S., Morel, Patrice, Mueller, Lukas A., Muhlemann, Joëlle, Nouri, Eva, Passeri, Valentina, Pezzotti, Mario, Qi, Qinzhou, Reinhardt, Didier, Rich, Melanie, Richert-Pöggeler, Katja R., Robbins, Tim P., Schatz, Michael C., Schranz, M. Eric, Schuurink, Robert C., Schwarzacher, Trude, Spelt, Kees, Tang, Haibao, Urbanus, Susan L., Vandenbussche, Michiel, Vijverberg, Kitty, Villarino, Gonzalo H., Warner, Ryan M., Weiss, Julia, Yue, Zhen, Zethof, Jan, Quattrocchio, Francesca, Sims, Thomas L. and Kuhlemeier, Cris (2016) Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nature Plants, 2 . 16074/1-16074/9. ISSN 2055-0278 Evolution Genetics Petunia Solanaceae http://www.nature.com/articles/nplants201674 doi:10.1038/NPLANTS.2016.74 doi:10.1038/NPLANTS.2016.74 |
| spellingShingle | Evolution Genetics Petunia Solanaceae Bombarely, Aureliano Moser, Michel Amrad, Avichai Bao, Manzhu Bapaume, Laure Barry, Cornelius S. Bliek, Mattijs Boersma, Maaike R. Borghi, Lorenzo Bruggmann, Rémy Bucher, Marcel D'Agostino, Nunzio Davies, Kevin Druege, Uwe Dudareva, Natalia Egea-Cortines, Marcos Delledonne, Massimo Fernandez-Pozo, Noe Franken, Philipp Grandont, Laurie Heslop-Harrison, J. S. Hintzsche, Jennifer Johns, Mitrick Koes, Ronald Lv, Xiaodan Lyons, Eric Malla, Diwa Martinoia, Enrico Mattson, Neil S. Morel, Patrice Mueller, Lukas A. Muhlemann, Joëlle Nouri, Eva Passeri, Valentina Pezzotti, Mario Qi, Qinzhou Reinhardt, Didier Rich, Melanie Richert-Pöggeler, Katja R. Robbins, Tim P. Schatz, Michael C. Schranz, M. Eric Schuurink, Robert C. Schwarzacher, Trude Spelt, Kees Tang, Haibao Urbanus, Susan L. Vandenbussche, Michiel Vijverberg, Kitty Villarino, Gonzalo H. Warner, Ryan M. Weiss, Julia Yue, Zhen Zethof, Jan Quattrocchio, Francesca Sims, Thomas L. Kuhlemeier, Cris Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida |
| title | Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida |
| title_full | Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida |
| title_fullStr | Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida |
| title_full_unstemmed | Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida |
| title_short | Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida |
| title_sort | insight into the evolution of the solanaceae from the parental genomes of petunia hybrida |
| topic | Evolution Genetics Petunia Solanaceae |
| url | https://eprints.nottingham.ac.uk/38550/ https://eprints.nottingham.ac.uk/38550/ https://eprints.nottingham.ac.uk/38550/ |