Estimating the within-household infection rate in emerging SIR epidemics among a community of households

This paper is concerned with estimation of the within household infection rate λL for a susceptible → infective → recovered epidemic among a population of households, from observation of the early, exponentially growing phase of an epidemic. Specifically, it is assumed that an estimate of the expone...

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Main Authors: Ball, Frank, Shaw, Laurence
Format: Article
Published: Springer Verlag 2015
Subjects:
Online Access:https://eprints.nottingham.ac.uk/34214/
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author Ball, Frank
Shaw, Laurence
author_facet Ball, Frank
Shaw, Laurence
author_sort Ball, Frank
building Nottingham Research Data Repository
collection Online Access
description This paper is concerned with estimation of the within household infection rate λL for a susceptible → infective → recovered epidemic among a population of households, from observation of the early, exponentially growing phase of an epidemic. Specifically, it is assumed that an estimate of the exponential growth rate is available from general data on an emerging epidemic and more-detailed, household-level data are available in a sample of households. Estimates of λL obtained using the final size distribution of single-household epidemics are usually biased owing to the emerging nature of the epidemic. A new method, which accounts correctly for the emerging nature of the epidemic, is developed by exploiting the asymptotic theory of supercritical branching processes and proved to yield a strongly consistent estimator of λL as the population and sampled households both tend to infinity in an appropriate fashion. The theory is illustrated by simulations which demonstrate that the new method is feasible for finite populations and numerical studies are used to explore how changes to the parameters governing the spread of an epidemic affect the bias of estimates based on single-household final size distributions.
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spelling nottingham-342142020-05-04T17:03:48Z https://eprints.nottingham.ac.uk/34214/ Estimating the within-household infection rate in emerging SIR epidemics among a community of households Ball, Frank Shaw, Laurence This paper is concerned with estimation of the within household infection rate λL for a susceptible → infective → recovered epidemic among a population of households, from observation of the early, exponentially growing phase of an epidemic. Specifically, it is assumed that an estimate of the exponential growth rate is available from general data on an emerging epidemic and more-detailed, household-level data are available in a sample of households. Estimates of λL obtained using the final size distribution of single-household epidemics are usually biased owing to the emerging nature of the epidemic. A new method, which accounts correctly for the emerging nature of the epidemic, is developed by exploiting the asymptotic theory of supercritical branching processes and proved to yield a strongly consistent estimator of λL as the population and sampled households both tend to infinity in an appropriate fashion. The theory is illustrated by simulations which demonstrate that the new method is feasible for finite populations and numerical studies are used to explore how changes to the parameters governing the spread of an epidemic affect the bias of estimates based on single-household final size distributions. Springer Verlag 2015-03-28 Article PeerReviewed Ball, Frank and Shaw, Laurence (2015) Estimating the within-household infection rate in emerging SIR epidemics among a community of households. Journal of Mathematical Biology, 71 (6). pp. 1705-1735. ISSN 1432-1416 Household epidemic model SIR epidemic Emerging epidemic Parameter estimation Branching process http://link.springer.com/article/10.1007/s00285-015-0872-5 doi:10.1007/s00285-015-0872-5 doi:10.1007/s00285-015-0872-5
spellingShingle Household epidemic model
SIR epidemic
Emerging epidemic
Parameter estimation
Branching process
Ball, Frank
Shaw, Laurence
Estimating the within-household infection rate in emerging SIR epidemics among a community of households
title Estimating the within-household infection rate in emerging SIR epidemics among a community of households
title_full Estimating the within-household infection rate in emerging SIR epidemics among a community of households
title_fullStr Estimating the within-household infection rate in emerging SIR epidemics among a community of households
title_full_unstemmed Estimating the within-household infection rate in emerging SIR epidemics among a community of households
title_short Estimating the within-household infection rate in emerging SIR epidemics among a community of households
title_sort estimating the within-household infection rate in emerging sir epidemics among a community of households
topic Household epidemic model
SIR epidemic
Emerging epidemic
Parameter estimation
Branching process
url https://eprints.nottingham.ac.uk/34214/
https://eprints.nottingham.ac.uk/34214/
https://eprints.nottingham.ac.uk/34214/