HTR4 gene structure and altered expression in the developing lung
Background: Meta-analyses of genome-wide association studies (GWAS) have identified single nucleotide polymorphisms (SNPs) spanning the 5-hydroxytryptamine receptor 4 (5-HT4R) gene (HTR4) associated with lung function. The aims of this study were to i) investigate the expression profile of HTR4 in...
| Main Authors: | , , , , , , , , , , , |
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| Format: | Article |
| Published: |
BioMed Central
2013
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| Online Access: | https://eprints.nottingham.ac.uk/3105/ |
| _version_ | 1848790955148181504 |
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| author | Hodge, Emily Nelson, Carl P. Miller, Suzanne Billington, Charlotte K. Stewart, Ceri E. Swan, Caroline Malarstig, Anders Henry, Amanda P. Gowland, Catherine Melén, Erik Hall, Ian P. Sayers, Ian |
| author_facet | Hodge, Emily Nelson, Carl P. Miller, Suzanne Billington, Charlotte K. Stewart, Ceri E. Swan, Caroline Malarstig, Anders Henry, Amanda P. Gowland, Catherine Melén, Erik Hall, Ian P. Sayers, Ian |
| author_sort | Hodge, Emily |
| building | Nottingham Research Data Repository |
| collection | Online Access |
| description | Background: Meta-analyses of genome-wide association studies (GWAS) have identified single nucleotide
polymorphisms (SNPs) spanning the 5-hydroxytryptamine receptor 4 (5-HT4R) gene (HTR4) associated with lung
function. The aims of this study were to i) investigate the expression profile of HTR4 in adult and fetal lung tissue
and cultured airway cells, ii) further define HTR4 gene structure and iii) explore the potential functional implications of key SNPs using a bioinformatic approach.
Methods: Following reverse transcription (RT)-PCR in human brain, 5′ rapid amplification of cDNA ends (5′ RACE) was used to examine the exonic structure of HTR4 at the 5′ end. Quantitative (Q)-PCR was used to quantify HTR4 mRNA expression in total RNA from cultured airway cells and whole lung tissue. Publically available gene microarray data on fetal samples of estimated gestational age 7–22 weeks were mined for HTR4 expression. Immunohistochemistry (IHC; in adult and fetal lung tissue) and a radioligand binding assay (in cultured airway cells) were used to analyze 5HT4R protein expression.
Results: IHC in adult lung, irrespective of the presence of chronic obstructive pulmonary disease (COPD), suggested low
level expression of 5-HT4R protein, which was most prominent in alveolar pneumocytes. There was evidence of differential 5-HT4R protein levels during gestation in fetal lung, which was also evident in gene expression microarray data. HTR4 mRNA expression, assessed by Q-PCR, was <0.5% relative to brain in total adult lung tissue and in human airway smooth muscle (HASM) and bronchial epithelial cells (HBEC) derived from adult donors. Radioligand binding experiments also indicated that HBEC and HASM cells did not express a significant 5-HT4R population. 5′ RACE in brain identified a novel Nterminal
variant, containing an extended N-terminal sequence. The functional significance of key HTR4 SNPs was investigated using the encyclopedia of DNA elements consortium (ENCODE) dataset. These analyses identified multiple alterations in regulatory motifs for transcription factors implicated in lung development, including Foxp1.
Conclusions: Taken together, these data suggest a role for HTR4 in lung development, which may at least in part explain
the genetic association with lung function. |
| first_indexed | 2025-11-14T18:20:50Z |
| format | Article |
| id | nottingham-3105 |
| institution | University of Nottingham Malaysia Campus |
| institution_category | Local University |
| last_indexed | 2025-11-14T18:20:50Z |
| publishDate | 2013 |
| publisher | BioMed Central |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | nottingham-31052024-08-15T15:14:15Z https://eprints.nottingham.ac.uk/3105/ HTR4 gene structure and altered expression in the developing lung Hodge, Emily Nelson, Carl P. Miller, Suzanne Billington, Charlotte K. Stewart, Ceri E. Swan, Caroline Malarstig, Anders Henry, Amanda P. Gowland, Catherine Melén, Erik Hall, Ian P. Sayers, Ian Background: Meta-analyses of genome-wide association studies (GWAS) have identified single nucleotide polymorphisms (SNPs) spanning the 5-hydroxytryptamine receptor 4 (5-HT4R) gene (HTR4) associated with lung function. The aims of this study were to i) investigate the expression profile of HTR4 in adult and fetal lung tissue and cultured airway cells, ii) further define HTR4 gene structure and iii) explore the potential functional implications of key SNPs using a bioinformatic approach. Methods: Following reverse transcription (RT)-PCR in human brain, 5′ rapid amplification of cDNA ends (5′ RACE) was used to examine the exonic structure of HTR4 at the 5′ end. Quantitative (Q)-PCR was used to quantify HTR4 mRNA expression in total RNA from cultured airway cells and whole lung tissue. Publically available gene microarray data on fetal samples of estimated gestational age 7–22 weeks were mined for HTR4 expression. Immunohistochemistry (IHC; in adult and fetal lung tissue) and a radioligand binding assay (in cultured airway cells) were used to analyze 5HT4R protein expression. Results: IHC in adult lung, irrespective of the presence of chronic obstructive pulmonary disease (COPD), suggested low level expression of 5-HT4R protein, which was most prominent in alveolar pneumocytes. There was evidence of differential 5-HT4R protein levels during gestation in fetal lung, which was also evident in gene expression microarray data. HTR4 mRNA expression, assessed by Q-PCR, was <0.5% relative to brain in total adult lung tissue and in human airway smooth muscle (HASM) and bronchial epithelial cells (HBEC) derived from adult donors. Radioligand binding experiments also indicated that HBEC and HASM cells did not express a significant 5-HT4R population. 5′ RACE in brain identified a novel Nterminal variant, containing an extended N-terminal sequence. The functional significance of key HTR4 SNPs was investigated using the encyclopedia of DNA elements consortium (ENCODE) dataset. These analyses identified multiple alterations in regulatory motifs for transcription factors implicated in lung development, including Foxp1. Conclusions: Taken together, these data suggest a role for HTR4 in lung development, which may at least in part explain the genetic association with lung function. BioMed Central 2013-07-26 Article PeerReviewed Hodge, Emily, Nelson, Carl P., Miller, Suzanne, Billington, Charlotte K., Stewart, Ceri E., Swan, Caroline, Malarstig, Anders, Henry, Amanda P., Gowland, Catherine, Melén, Erik, Hall, Ian P. and Sayers, Ian (2013) HTR4 gene structure and altered expression in the developing lung. Respiratory Research, 14 (77). pp. 1-13. ISSN 1465-9921 http://respiratory-research.com/content/14/1/77 doi:10.1186/1465-9921-14-77 doi:10.1186/1465-9921-14-77 |
| spellingShingle | Hodge, Emily Nelson, Carl P. Miller, Suzanne Billington, Charlotte K. Stewart, Ceri E. Swan, Caroline Malarstig, Anders Henry, Amanda P. Gowland, Catherine Melén, Erik Hall, Ian P. Sayers, Ian HTR4 gene structure and altered expression in the developing lung |
| title | HTR4 gene structure and altered expression in the developing lung |
| title_full | HTR4 gene structure and altered expression in the developing lung |
| title_fullStr | HTR4 gene structure and altered expression in the developing lung |
| title_full_unstemmed | HTR4 gene structure and altered expression in the developing lung |
| title_short | HTR4 gene structure and altered expression in the developing lung |
| title_sort | htr4 gene structure and altered expression in the developing lung |
| url | https://eprints.nottingham.ac.uk/3105/ https://eprints.nottingham.ac.uk/3105/ https://eprints.nottingham.ac.uk/3105/ |