ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization

QR Code

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization

Background: Statistical analysis of DNA microarray data provides a valuable diagnostic tool for the investigation of genetic components of diseases. To take advantage of the multitude of available data sets and analysis methods, it is desirable to combine both different algorithms and data from dif...

Full description

Bibliographic Details
Main Authors:	Glaab, Enrico, Garibaldi, Jon, Krasnogor, Natalio
Format:	Article
Published:	BioMed Central Ltd 2009
Subjects:	microarray gene expression feature selection prediction classification machine learning clustering network analysis co-expression pathway normalization cross-study annotation visualization
Online Access:	https://eprints.nottingham.ac.uk/1271/

Similar Items

Analysing functional genomics data using novel ensemble, consensus and data fusion techniques
by: Glaab, Enrico
Published: (2011)

Using rule-based machine learning for candidate disease gene prioritization and sample classification of cancer gene expression data
by: Glaab, Enrico, et al.
Published: (2012)

Integrated framework with association analysis for gene selection in microarray data classification
by: Ong, Huey Fang
Published: (2011)

Differential gene expression at different stages of mesocarp development in high- and low-yielding oil palm
by: Wong, Yick Ching, et al.
Published: (2017)

Learning pathway-based decision rules to classify microarray cancer samples
by: Glaab, Enrico, et al.
Published: (2010)

Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray
by: Fabi, João Paulo, et al.
Published: (2012)

Passenger Classification for an Airport Movement Forecast System
by: Richter, S., et al.
Published: (2009)

Distributed incremental fingerprint identification with reduced database penetration rate using a hierarchical classification based on feature fusion and selection
by: Peralta, Daniel, et al.
Published: (2017)

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
by: Goodwin, Stephen B., et al.
Published: (2011)

A Hierarchical Separation and Classification Network for Dynamic Micro-Expression Classification
by: Vice, Jordan, et al.
Published: (2023)

'Kiriman ekspres' a study of the prospects and problems / Badroolhisham Mohd. Salleh
by: Mohd. Salleh, Badroolhisham
Published: (1989)

Intracellular Proteinase a Activities and Gene Expression of Isolated Candida Species in Malaysian and Iranian Patients
by: Saroukolaei, Shahla Amri
Published: (2011)

ROSEFW-RF: the winner algorithm for the ECBDL’14 big data competition: an extremely imbalanced big data bioinformatics problem
by: Triguero, Isaac, et al.
Published: (2015)

Development and usage of protein microarrays for the quantitative measurement of Panton-Valentine leukocidin
by: Stieber, B., et al.
Published: (2013)

Suboptimal evolutionary novel environments promote singular altered gravity responses of transcriptome during Drosophila metamorphosis
by: Herranz, Raul, et al.
Published: (2013)

Expression alterations define unique molecular characteristics of spinal ependymomas
by: Lourdusamy, Anbarasu, et al.
Published: (2015)

The application of protein microarray assays in psychoneuroimmunology
by: Ayling, K., et al.
Published: (2017)

Profiling humoral immune responses to Clostridium difficile-specific antigens by protein microarray analysis
by: Negm, Ola H., et al.
Published: (2015)

Efficacy of Biophysiological Measurements at FTFPs for Facial Expression Classification: A Validation
by: Khan, Masood Mehmood, et al.
Published: (2012)

Identification of candidate genes expressions and polymorphisms associated with atherosclerosis from postmortem cases in Hospital Kuala Lumpur and Hospital Serdang, Malaysia
by: Blin, Joan
Published: (2013)

Influence of ARHGEF3 and RHOA Knockdown on ACTA2 and Other Genes in Osteoblasts and Osteoclasts
by: Mullin, B., et al.
Published: (2014)

Automatic image annotation applied to habitat classification
by: Torres Torres, Mercedes
Published: (2015)

Development and use of a DNA microarray for the detection of enteritic pathogens in cattle and pigs
by: Belkhiri, Aouatif
Published: (2018)

Human-like rule optimization for continuous domains
by: Hadzic, Fedja, et al.
Published: (2008)

Rule optimizing technique motivated by human concept formation
by: Hadzic, Fedja, et al.
Published: (2008)

Using the symmetrical Tau criterion for feature selection decision tree and neural network learning
by: Hadzic, Fedja, et al.
Published: (2006)

Text Categorization Using an Automatically Generated Labelled Dataset: An Evaluation Study
by: Zhu, Dengya, et al.
Published: (2014)

A study on expressway merging and diverging traffic operation / Nurul Qastalani Radzuan
by: Radzuan, Nurul Qastalani
Published: (2015)

Cloning and Expression of Staphylococcus Epidermidis AT2 Lipase in Yarrowia Lipolytica
by: Mohd Nooh, Hisham
Published: (2011)

Expression and characterization of thermotolerant lipase with broad pH profiles isolated from an Antarctic Pseudomonas sp strain AMS3
by: Latip, Wahhida, et al.
Published: (2016)

Gene expression, characterization and in silico studies of delta fatty acid desaturases
by: Abd Halim, Nur Farah Anis
Published: (2022)

Identification of suitable biomarkers for leptospiral molecular diagnosis and gene expression in Cavia porcellus linnaeus model
by: Kumaran, Sharmilah Kumari
Published: (2021)

A measure of competence based on random classification for dynamic ensemble selection
by: Woloszynski, Tomasz, et al.
Published: (2012)

Transcriptomic analysis reveals Toxoplasma gondii strain-specific differences in host cell response to dense granule protein GRA15
by: Liu, Qing, et al.
Published: (2018)

A methodology for automatic classification of breast cancer immunohistochemical data using semi-supervised fuzzy c-means
by: Lai, Daphne Teck Ching, et al.
Published: (2014)

Diagnostics based Principal Component Analysis for Robust Plane Fitting in Laser Data
by: Nurunnabi, Abdul, et al.
Published: (2013)

An investigation of fuzzy methods and meta learning for feature selection
by: Shen, Zixiao
Published: (2022)

Clinicopathological and prognostic significance of mitogen-activated protein kinases (MAPK) in breast cancers
by: Ahmad, Dena Akram Jerjees, et al.
Published: (2016)

Artificial neural network system for cell classification using single cell RNA expression
by: Lin, Xin, et al.
Published: (2021)

Robust Outlier Detection and Saliency Features Estimation in Point Cloud Data
by: Nurunnabi, Abdul, et al.
Published: (2013)