Cloning and expression of hypothetical protein targets in burkholderia pseudomallei by Transposon-Directed Insertion Site Sequencing (TraDIS) technique
Melioidosis is an infectious disease caused by a bacterium called Burkholderia pseudomallei found in contaminated water and soil. B. pseudomallei is naturally resistant to many commonly used antibiotics and thus current research efforts focus on prevention of disease and finding ways to reduce mo...
| Main Authors: | , , , |
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| Format: | Proceeding Paper |
| Language: | English |
| Published: |
Centre og Graduate Studies, Kolej Universiti Islam Selangor (KUIS)
2016
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| Subjects: | |
| Online Access: | http://irep.iium.edu.my/58209/ http://irep.iium.edu.my/58209/1/58209_CLONING%20AND%20EXPRESSION%20OF%20HYPOTHETICAL.pdf |
| _version_ | 1848785070670741504 |
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| author | Drahaman, Siti Marhamah Raih, Mohd Firdaus Muhamad Bunnori, Noraslinda Mohamed Rehan, Aisyah |
| author_facet | Drahaman, Siti Marhamah Raih, Mohd Firdaus Muhamad Bunnori, Noraslinda Mohamed Rehan, Aisyah |
| author_sort | Drahaman, Siti Marhamah |
| building | IIUM Repository |
| collection | Online Access |
| description | Melioidosis is an infectious disease caused by a bacterium called Burkholderia pseudomallei
found in contaminated water and soil. B. pseudomallei is naturally resistant to many commonly
used antibiotics and thus current research efforts focus on prevention of disease and finding ways
to reduce mortality. Identification of B. pseudomallei essential genes and its products may
represent excellent targets for development of novel antimicrobial drugs. In this study, primers
were designed for the PCR amplification of five target genes selected based on bioinformatics
analysis from transposon-directed insertion site sequencing (TraDIS) library which compiles
hypothetical proteins. Successfully amplified target genes were cloned into Gateway™ plasmid
before being transformed into E. coli host. Expression trials of the target protein were performed
for affinity tag protein purification. The presence of expressed soluble or non-soluble proteins
were observed using SDS-PAGE electrophoresis. From this study, five selected target genes
were successfully amplified using two-step PCR. One target gene, BPSL 2774 was successfully
cloned into Gateway™ pDEST15 (GST-tagged) and purified using glutathione affinity protein
purification kit. Mass spectrometry result has confirmed the presence of expressed and partially
soluble GST-tagged protein of BPSL 2774. Using BLASTp search to PDB database and
I-TASSER structure and function prediction softwares, BPSL 2774 is shown to have conserved
domains of Glycosyltransferase GTB type superfamily and predicted to function as a
glycosyltransferase. This enzyme is important in cell wall biosynthesis and transfer of sugar.
This work provides the foundation for further investigation into the function of hypothetical
protein BPSL2774, its possible role as a glycosyltransferase and as a potential virulence factor
for B. pseudomallei. |
| first_indexed | 2025-11-14T16:47:18Z |
| format | Proceeding Paper |
| id | iium-58209 |
| institution | International Islamic University Malaysia |
| institution_category | Local University |
| language | English |
| last_indexed | 2025-11-14T16:47:18Z |
| publishDate | 2016 |
| publisher | Centre og Graduate Studies, Kolej Universiti Islam Selangor (KUIS) |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | iium-582092017-09-05T07:58:48Z http://irep.iium.edu.my/58209/ Cloning and expression of hypothetical protein targets in burkholderia pseudomallei by Transposon-Directed Insertion Site Sequencing (TraDIS) technique Drahaman, Siti Marhamah Raih, Mohd Firdaus Muhamad Bunnori, Noraslinda Mohamed Rehan, Aisyah QR Microbiology Melioidosis is an infectious disease caused by a bacterium called Burkholderia pseudomallei found in contaminated water and soil. B. pseudomallei is naturally resistant to many commonly used antibiotics and thus current research efforts focus on prevention of disease and finding ways to reduce mortality. Identification of B. pseudomallei essential genes and its products may represent excellent targets for development of novel antimicrobial drugs. In this study, primers were designed for the PCR amplification of five target genes selected based on bioinformatics analysis from transposon-directed insertion site sequencing (TraDIS) library which compiles hypothetical proteins. Successfully amplified target genes were cloned into Gateway™ plasmid before being transformed into E. coli host. Expression trials of the target protein were performed for affinity tag protein purification. The presence of expressed soluble or non-soluble proteins were observed using SDS-PAGE electrophoresis. From this study, five selected target genes were successfully amplified using two-step PCR. One target gene, BPSL 2774 was successfully cloned into Gateway™ pDEST15 (GST-tagged) and purified using glutathione affinity protein purification kit. Mass spectrometry result has confirmed the presence of expressed and partially soluble GST-tagged protein of BPSL 2774. Using BLASTp search to PDB database and I-TASSER structure and function prediction softwares, BPSL 2774 is shown to have conserved domains of Glycosyltransferase GTB type superfamily and predicted to function as a glycosyltransferase. This enzyme is important in cell wall biosynthesis and transfer of sugar. This work provides the foundation for further investigation into the function of hypothetical protein BPSL2774, its possible role as a glycosyltransferase and as a potential virulence factor for B. pseudomallei. Centre og Graduate Studies, Kolej Universiti Islam Selangor (KUIS) 2016-12-02 Proceeding Paper PeerReviewed application/pdf en http://irep.iium.edu.my/58209/1/58209_CLONING%20AND%20EXPRESSION%20OF%20HYPOTHETICAL.pdf Drahaman, Siti Marhamah and Raih, Mohd Firdaus and Muhamad Bunnori, Noraslinda and Mohamed Rehan, Aisyah (2016) Cloning and expression of hypothetical protein targets in burkholderia pseudomallei by Transposon-Directed Insertion Site Sequencing (TraDIS) technique. In: 3rd International Conference on Postgraduate Research (ICPR2016) – “Connecting Minds To The World”, 1st-2nd Dec. 2016, Bukit Jambul, Penang. http://conference.kuis.edu.my/icpr16/FRONT%20PAGE%20E%20PROS.html |
| spellingShingle | QR Microbiology Drahaman, Siti Marhamah Raih, Mohd Firdaus Muhamad Bunnori, Noraslinda Mohamed Rehan, Aisyah Cloning and expression of hypothetical protein targets in burkholderia pseudomallei by Transposon-Directed Insertion Site Sequencing (TraDIS) technique |
| title | Cloning and expression of hypothetical protein targets in burkholderia pseudomallei by Transposon-Directed Insertion Site Sequencing (TraDIS) technique |
| title_full | Cloning and expression of hypothetical protein targets in burkholderia pseudomallei by Transposon-Directed Insertion Site Sequencing (TraDIS) technique |
| title_fullStr | Cloning and expression of hypothetical protein targets in burkholderia pseudomallei by Transposon-Directed Insertion Site Sequencing (TraDIS) technique |
| title_full_unstemmed | Cloning and expression of hypothetical protein targets in burkholderia pseudomallei by Transposon-Directed Insertion Site Sequencing (TraDIS) technique |
| title_short | Cloning and expression of hypothetical protein targets in burkholderia pseudomallei by Transposon-Directed Insertion Site Sequencing (TraDIS) technique |
| title_sort | cloning and expression of hypothetical protein targets in burkholderia pseudomallei by transposon-directed insertion site sequencing (tradis) technique |
| topic | QR Microbiology |
| url | http://irep.iium.edu.my/58209/ http://irep.iium.edu.my/58209/ http://irep.iium.edu.my/58209/1/58209_CLONING%20AND%20EXPRESSION%20OF%20HYPOTHETICAL.pdf |