Pan-parastagonospora comparative genome analysis-effector prediction and genome evolution

QR Code

Pan-parastagonospora comparative genome analysis-effector prediction and genome evolution

We report a fungal pan-genome study involving Parastagonospora spp., including 21 isolates of the wheat (Triticum aestivum) pathogen Parastagonospora nodorum, 10 of the grass-infecting Parastagonospora avenae, and 2 of a closely related undefined sister species. We observed substantial variation in...

Full description

Bibliographic Details
Main Authors:	Syme, Robert, Tan, Kar-Chun, Rybak, Katarzyna, Friesen, T., McDonald, B., Oliver, Richard, Hane, James
Format:	Journal Article
Published:	Oxford University Press 2018
Online Access:	http://hdl.handle.net/20.500.11937/71164

Similar Items

Resequencing and comparative genomics of stagonospora nodorum: Sectional gene absence and effector discovery
by: Syme, Robert, et al.
Published: (2013)

Comparative Genomics of Parastagonospora and Pyrenophora species
by: Syme, Robert Andrew
Published: (2015)

Comprehensive annotation of the Parastagonospora nodorum reference genome using next-generation genomics, transcriptomics and proteogenomics
by: Syme, Robert, et al.
Published: (2016)

Sensitivity to three Parastagonospora nodorum necrotrophic effectors in current Australian wheat cultivars and the presence of further fungal effectors
by: Tan, Kar-Chun, et al.
Published: (2013)

Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and redundancy of virulence-related functions within an accessory chromosome
by: Bertazzoni, Stefania, et al.
Published: (2021)

Validation of genome-wide association studies as a tool to identify virulence factors in parastagonospora nodorum
by: Gao, Y., et al.
Published: (2016)

Evolution of Linked Avirulence Effectors in Leptosphaeria maculans Is Affected by Genomic Environment and Exposure to Resistance Genes in Host Plants
by: Van de Wouw, A., et al.
Published: (2010)

Genomic and Comparative Analysis of the Class Dothideomycetes
by: Hane, James, et al.
Published: (2011)

Overview of genomic and bioinformatic resources for Zymoseptoria.
by: Renwick, Alison, et al.
Published: (2015)

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres
by: Ellwood, Simon, et al.
Published: (2010)

Comparative genomics reveals insights into avian genome evolution and adaptation
by: Zhang, G., et al.
Published: (2014)

Global diversity and distribution of three necrotrophic effectors in Phaeosphaeria nodorum and related species
by: McDonald, M., et al.
Published: (2013)

Identification and characterization of the SnTox6-Snn6 interaction in the Parastagonospora nodorum-wheat pathosystem
by: Gao, Y., et al.
Published: (2015)

Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity
by: Moolhuijzen, Paula, et al.
Published: (2018)

The cancer genome atlas pan-cancer analysis project
by: Weinstein, J., et al.
Published: (2013)

A functional genomics approach to dissect the mode of action of the Stagonospora nodorum effector protein SnToxA in wheat
by: Vincent, D., et al.
Published: (2011)

Assessing European wheat sensitivities to parastagonospora nodorum necrotrophic effectors and fine-mapping the Snn3-B1 locus conferring sensitivity to the effector SnTox3
by: Downie, R., et al.
Published: (2018)

The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species.
by: Pattemore, J., et al.
Published: (2014)

Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens.
by: Condon, Bradford J., et al.
Published: (2013)

Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8
by: Hane, James, et al.
Published: (2014)

OcculterCut: A comprehensive survey of AT-rich regions in fungal genomes.
by: Renwick, Alison, et al.
Published: (2016)

Transposable element genomic fissuring in Pyrenophora teres is associated with genome expansion and dynamics of host-pathogen genetic interactions
by: Syme, Robert, et al.
Published: (2018)

Bioinformatic prediction of plant–pathogenicity effector proteins of fungi
by: Jones, Darcy, et al.
Published: (2018)

A genome-wide survey of the secondary metabolite biosynthesis genes in the wheat pathogen Parastagonospora nodorum
by: Chooi, Y., et al.
Published: (2014)

Effector gene prediction from fungal pathogen genome assemblies
by: Testa, Alison Clare
Published: (2016)

Stagonospora nodorum: From pathology to genomics and host resistance
by: Oliver, Richard, et al.
Published: (2012)

Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis
by: Tan, Kar-Chun, et al.
Published: (2012)

The Velvet transcription factor PnVeA regulates necrotrophic effectors and secondary metabolism in the wheat pathogen Parastagonospora nodorum
by: Morikawa, Shota, et al.
Published: (2024)

Regulation of proteinaceous effector expression in phytopathogenic fungi
by: Tan, Kar-Chun, et al.
Published: (2017)

Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
by: Williams, A., et al.
Published: (2016)

The cysteine rich necrotrophic effector SnTox1 produced by Stagonospora nodorum triggers susceptibility of wheat lines harboring Snn1
by: Liu, Z., et al.
Published: (2012)

Prevalence and importance of sensitivity to Stagonospora nodorum necrotrophic effector SnTox3 in current Western Australian wheat cultivars.
by: Lichtenzveig, Judith, et al.
Published: (2011)

Calculating RIP mutation in fungal genomes using RIPCAL
by: Hane, James
Published: (2015)

Absence of detectable yield penalty associated with insensitivity to Pleosporales necrotrophic effectors in wheat grown in the West Australian wheat belt
by: Oliver, Richard, et al.
Published: (2014)

SnTox3 Acts in Effector Triggered Susceptibility to Induce Disease on Wheat Carrying the Snn3 Gene
by: Liu, Z., et al.
Published: (2009)

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
by: Rouxel, Thierry, et al.
Published: (2011)

Host specific toxins; effectors of necrotrophic pathogenicity
by: Friesen, T., et al.
Published: (2008)

Functional redundancy of necrotrophic effectors – consequences for exploitation for breeding
by: Tan, Kar-Chun, et al.
Published: (2015)

RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
by: Hane, J., et al.
Published: (2008)

Functional genomics-guided discovery of a light-activated phytotoxin in the wheat pathogen Parastagonospora nodorum via pathway activation
by: Chooi, Y., et al.
Published: (2017)

Cannot write session to /tmp/vufind_sessions/sess_lllotjotblhgofstogbauc5ib7