Comprehensive annotation of the Parastagonospora nodorum reference genome using next-generation genomics, transcriptomics and proteogenomics
Parastagonospora nodorum, the causal agent of Septoria nodorum blotch (SNB), is an economically important pathogen of wheat (Triticum spp.), and a model for the study of necrotrophic pathology and genome evolution. The reference P. nodorum strain SN15 was the first Dothideomycete with a published ge...
| Main Authors: | Syme, Robert, Tan, Kar-Chun, Hane, James, Dodhia, Kejal, Stoll, T., Hastie, M., Furuki, Eiko, Ellwood, Simon, Williams, A., Tan, Y., Renwick, Alison, Gorman, J., Oliver, Richard |
|---|---|
| Format: | Journal Article |
| Published: |
Public Library of Science
2016
|
| Subjects: | |
| Online Access: | http://hdl.handle.net/20.500.11937/7114 |
Similar Items
Stagonospora nodorum: cause of stagonospora nodorum blotch of wheat
by: Solomon, P., et al.
Published: (2006)
by: Solomon, P., et al.
Published: (2006)
Sensitivity to three Parastagonospora nodorum necrotrophic effectors in current Australian wheat cultivars and the presence of further fungal effectors
by: Tan, Kar-Chun, et al.
Published: (2013)
by: Tan, Kar-Chun, et al.
Published: (2013)
Pan-parastagonospora comparative genome analysis-effector prediction and genome evolution
by: Syme, Robert, et al.
Published: (2018)
by: Syme, Robert, et al.
Published: (2018)
Comparative Genomics of Parastagonospora and Pyrenophora species
by: Syme, Robert Andrew
Published: (2015)
by: Syme, Robert Andrew
Published: (2015)
Normalization of metabolites in heterogenous systems using genomics
by: Solomon, P., et al.
Published: (2006)
by: Solomon, P., et al.
Published: (2006)
Low Amplitude Boom-and-Bust Cycles Define the Septoria Nodorum Blotch Interaction
by: Phan, Huyen T. T., et al.
Published: (2020)
by: Phan, Huyen T. T., et al.
Published: (2020)
Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium
by: Humphreys, Christopher M., et al.
Published: (2015)
by: Humphreys, Christopher M., et al.
Published: (2015)
CodingQuarry: Highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts
by: Testa, Alison, et al.
Published: (2015)
by: Testa, Alison, et al.
Published: (2015)
Absence of detectable yield penalty associated with insensitivity to Pleosporales necrotrophic effectors in wheat grown in the West Australian wheat belt
by: Oliver, Richard, et al.
Published: (2014)
by: Oliver, Richard, et al.
Published: (2014)
Genome-wide association mapping of resistance to septoria nodorum leaf blotch in a nordic spring wheat collection
by: Ruud, A.K., et al.
Published: (2019)
by: Ruud, A.K., et al.
Published: (2019)
GWAS analysis reveals distinct pathogenicity profiles of Australian Parastagonospora nodorum isolates and identification of marker-trait-associations to septoria nodorum blotch
by: Phan, Huyen, et al.
Published: (2021)
by: Phan, Huyen, et al.
Published: (2021)
Metabolite profiling identifies the mycotoxin alternariol in the pathogen Stagonospora nodorum
by: Tan, Kar-Chun, et al.
Published: (2009)
by: Tan, Kar-Chun, et al.
Published: (2009)
The Velvet transcription factor PnVeA regulates necrotrophic effectors and secondary metabolism in the wheat pathogen Parastagonospora nodorum
by: Morikawa, Shota, et al.
Published: (2024)
by: Morikawa, Shota, et al.
Published: (2024)
Proteogenomic gene structure validation in the pineapple genome
by: Ariffin, Norazrin, et al.
by: Ariffin, Norazrin, et al.
Malayamycin, a new streptomycete antifungal compound, specifically inhibits sporulation of Stagonospora nodorum (Berk) Castell and Germano, the cause of wheat glume blotch disease
by: Li, W., et al.
Published: (2008)
by: Li, W., et al.
Published: (2008)
A genome-wide survey of the secondary metabolite biosynthesis genes in the wheat pathogen Parastagonospora nodorum
by: Chooi, Y., et al.
Published: (2014)
by: Chooi, Y., et al.
Published: (2014)
Validation of genome-wide association studies as a tool to identify virulence factors in parastagonospora nodorum
by: Gao, Y., et al.
Published: (2016)
by: Gao, Y., et al.
Published: (2016)
Resequencing and comparative genomics of stagonospora nodorum: Sectional gene absence and effector discovery
by: Syme, Robert, et al.
Published: (2013)
by: Syme, Robert, et al.
Published: (2013)
Assembly and annotation of the black spruce genome provide insights on spruce phylogeny and evolution of stress response
by: Lo, T., et al.
Published: (2024)
by: Lo, T., et al.
Published: (2024)
Trehalose biosynthesis is involved in sporulation of Stagonospora nodorum
by: Lowe, R., et al.
Published: (2009)
by: Lowe, R., et al.
Published: (2009)
The automatic re-annotation of web images for improving access for blind users
by: Misman, Ahmad Fatzilah
Published: (2014)
by: Misman, Ahmad Fatzilah
Published: (2014)
Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and redundancy of virulence-related functions within an accessory chromosome
by: Bertazzoni, Stefania, et al.
Published: (2021)
by: Bertazzoni, Stefania, et al.
Published: (2021)
Functional genomics-guided discovery of a light-activated phytotoxin in the wheat pathogen Parastagonospora nodorum via pathway activation
by: Chooi, Y., et al.
Published: (2017)
by: Chooi, Y., et al.
Published: (2017)
Genetic mapping using a wheat multi-founder population reveals a locus on chromosome 2A controlling resistance to both leaf and glume blotch caused by the necrotrophic fungal pathogen Parastagonospora nodorum
by: Lin, M., et al.
Published: (2020)
by: Lin, M., et al.
Published: (2020)
Proteomic identification of extracellular proteins regulated by the Gna1 Gα subunit in Stagonospora nodorum
by: Tan, Kar-Chun, et al.
Published: (2009)
by: Tan, Kar-Chun, et al.
Published: (2009)
Automatic image annotation applied to habitat classification
by: Torres Torres, Mercedes
Published: (2015)
by: Torres Torres, Mercedes
Published: (2015)
Structural characterisation of the interaction between Triticum aestivum and the dothideomycete pathogen Stagonospora nodorum
by: Solomon, P., et al.
Published: (2006)
by: Solomon, P., et al.
Published: (2006)
Identification and characterization of the SnTox6-Snn6 interaction in the Parastagonospora nodorum-wheat pathosystem
by: Gao, Y., et al.
Published: (2015)
by: Gao, Y., et al.
Published: (2015)
Overview of genomic and bioinformatic resources for Zymoseptoria.
by: Renwick, Alison, et al.
Published: (2015)
by: Renwick, Alison, et al.
Published: (2015)
Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography . and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum
by: Bringans, S., et al.
Published: (2009)
by: Bringans, S., et al.
Published: (2009)
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
by: Goodwin, Stephen B., et al.
Published: (2011)
by: Goodwin, Stephen B., et al.
Published: (2011)
Stagonospora nodorum: From pathology to genomics and host resistance
by: Oliver, Richard, et al.
Published: (2012)
by: Oliver, Richard, et al.
Published: (2012)
Novel sources of resistance to Septoria nodorum blotch in the Vavilov wheat collection identified by genome-wide association studies
by: Phan, H., et al.
Published: (2018)
by: Phan, H., et al.
Published: (2018)
Genome sequencing and annotation of Cellulomonas sp. HZM
by: Chua, P., et al.
Published: (2015)
by: Chua, P., et al.
Published: (2015)
Genome sequencing and annotation of Aeromonas sp. HZM
by: Chua, P., et al.
Published: (2015)
by: Chua, P., et al.
Published: (2015)
Global diversity and distribution of three necrotrophic effectors in Phaeosphaeria nodorum and related species
by: McDonald, M., et al.
Published: (2013)
by: McDonald, M., et al.
Published: (2013)
Towards the use of Semi-structured Annotators for Automated Essay Grading
by: Lam, Hon, et al.
Published: (2010)
by: Lam, Hon, et al.
Published: (2010)
Focused crawling for automatic service discovery, annotation and classification in industrial digital ecosystems
by: Dong, Hai, et al.
Published: (2011)
by: Dong, Hai, et al.
Published: (2011)
Assessing European wheat sensitivities to parastagonospora nodorum necrotrophic effectors and fine-mapping the Snn3-B1 locus conferring sensitivity to the effector SnTox3
by: Downie, R., et al.
Published: (2018)
by: Downie, R., et al.
Published: (2018)
Characterisation of transcriptional elements regulating
virulence during Parastagonospora nodorum infection of
wheat
by: John, Evan Johann
Published: (2021)
by: John, Evan Johann
Published: (2021)
Similar Items
-
Stagonospora nodorum: cause of stagonospora nodorum blotch of wheat
by: Solomon, P., et al.
Published: (2006) -
Sensitivity to three Parastagonospora nodorum necrotrophic effectors in current Australian wheat cultivars and the presence of further fungal effectors
by: Tan, Kar-Chun, et al.
Published: (2013) -
Pan-parastagonospora comparative genome analysis-effector prediction and genome evolution
by: Syme, Robert, et al.
Published: (2018) -
Comparative Genomics of Parastagonospora and Pyrenophora species
by: Syme, Robert Andrew
Published: (2015) -
Normalization of metabolites in heterogenous systems using genomics
by: Solomon, P., et al.
Published: (2006)