Testing the use of molecular dynamics to simulate fluorophore motions and FRET

QR Code

Testing the use of molecular dynamics to simulate fluorophore motions and FRET

Fluorescence resonance energy transfer (FRET) is commonly used to determine the proximity of fluorophores, but usually many assumptions are required to gain a quantitative relationship between the likelihood of energy transfer and fluorophore separation. Molecular Dynamics (MD) simulations provide o...

Full description

Bibliographic Details
Main Authors:	Deplazes, Evelyne, Jayatilaka, D., Corry, B.
Format:	Journal Article
Published:	R S C Publications 2011
Online Access:	http://hdl.handle.net/20.500.11937/66419

Similar Items

ExiFRET: Flexible tool for understanding FRET in complex geometries
by: Deplazes, Evelyne, et al.
Published: (2012)

Structural Investigation of MscL Gating Using Experimental Data and Coarse Grained MD Simulations
by: Deplazes, Evelyne, et al.
Published: (2012)

Comparing the Ability of Enhanced Sampling Molecular Dynamics Methods to Reproduce the Behavior of Fluorescent Labels on Proteins
by: Walczewska-Szewc, K., et al.
Published: (2015)

Molecular simulations of venom peptide-membrane interactions: Progress and challenges
by: Deplazes, Evelyne
Published: (2018)

A study of electron regeneration efficiency in fluorophore
by: N.F., Shaafi, et al.
Published: (2020)

Characterisation of the structure and oligomerisation of islet amyloid polypeptides (IAPP): A review of molecular dynamics simulation studies
by: Moore, S., et al.
Published: (2018)

Characterizing the conformational dynamics of metal-free PsaA using molecular dynamics simulations and electron paramagnetic resonance spectroscopy
by: Deplazes, Evelyne, et al.
Published: (2015)

Synthesis of fluorophore-doped silica nanoparticles using stober method / Nurul Basyeerah Naharazmi
by: Naharazmi, Nurul Basyeerah
Published: (2017)

Numerical modelling of the effect of fretting wear on fretting fatigue
by: Madge, Jason John
Published: (2009)

Representative fretting fatigue testing and prediction for splined couplings
by: Houghton, Dean
Published: (2009)

The role of debris in fretting: investigation into the interrelated effects of displacement amplitude and frequency in fretting wear
by: Kirk, Adam
Published: (2021)

Novel applications of organic fluorophores: White light emission, chemosensor and ambient microdroplet synthesis / Norfatirah Muhamad Sarih
by: Norfatirah , Muhamad Sarih
Published: (2021)

Fretting wear studies of aeroengine materials
by: Soh, Hian Ping
Published: (2006)

Molecular dynamics simulations using graphics processing units
by: Baker, J.A., et al.
Published: (2011)

On the Missing Links in Quantum Dot Solar Cells: a DFT Study on Fluorophore Oxidation and Reduction Processes in Sensitized Solar Cells
by: Saifful Kamaluddin, Muzakir, et al.
Published: (2013)

Implementation of wheelchair motion control based on electrooculography using simulation and experimental performance testing
by: Mohd Noor, Nurul Muthmainnah, et al.
Published: (2014)

An experimental study on the key fretting variables for flexible marine risers
by: O’Halloran, S.M., et al.
Published: (2018)

The effect of shot peening on the initiation of fatigue cracks by fretting
by: Leadbeater, G.
Published: (1983)

Fretting damage of high carbon chromium bearing steel
by: Kuno, Masato
Published: (1988)

Investigation of the interrelated effects of temperature and frequency on fretting wear
by: Jin, Xiaozhe
Published: (2017)

Finite element modelling of damage fracture and fretting fatigue
by: Wahab, M. Abdel, et al.
Published: (2012)

Characterization Of Fretting Fatigue of 7075-T6 Aluminium Alloy
by: Jacob, M. Suresh Devanesan
Published: (2006)

Molecular dynamic simulation of patchoulol biotransformation
by: Norul Afwan, Kamarudin
Published: (2016)

Probing polyoxometalate-protein interactions using molecular dynamics simulations
by: Solé-Daura, Albert, et al.
Published: (2016)

Molecular interaction of patchouli extraction process using molecular dynamic simulation approach
by: Siti Hana, Abu Bakar
Published: (2014)

Molecular dynamics simulation of radiation damage cascades in diamond
by: Buchan, J., et al.
Published: (2015)

Molecular Dynamic Simulation of the Patchouli Oil Extraction Process
by: Fatmawati, Adam, et al.
Published: (2014)

Effect of test conditions on the temperature at which a protective debris bed is formed in fretting of a high strength steel
by: Hayes, E.K., et al.
Published: (2017)

The effect of shot peening on fatigue and fretting-fatigue of aluminium alloys
by: Fair, G.H.
Published: (1988)

A model for the role of debris ejection in development of fretting wear
by: Zhu, Tengtuo
Published: (2022)

User Experience Using Motion Capture: Simulation of Human Motion for Multimedia Applications
by: Joon, Jong Sze, et al.
Published: (2008)

Molecular Dynamics Simulation of Ibuprofen Crystal Polymorph
by: Mohammad Safuan, Mat Noor
Published: (2012)

Polypeptide and Protein Modeling for Drug Design
by: O'Mara, M., et al.
Published: (2014)

Molecular dynamics and functional studies define a hot spot of crystal contacts essential for PcTx1 inhibition of acid-sensing ion channel 1a
by: Saez, N., et al.
Published: (2015)

The effect of H3O+ on the membrane morphology and hydrogen bonding of a phospholipid bilayer
by: Deplazes, Evelyne, et al.
Published: (2018)

The effect of hydronium ions on the structure of phospholipid membranes
by: Deplazes, Evelyne, et al.
Published: (2017)

The effect of temperature on wear and friction of a high strength steel in fretting
by: Pearson, S.R., et al.
Published: (2013)

Effect of the length on the tensile deformation of nickel nanowires using molecular dynamics simulations
by: A. G. N., Sofiah, et al.
Published: (2016)

Effect of the length on the tensile deformation of nickel nanowires using molecular dynamic simulations
by: Nurhanis Sofiah, Abd Ghafar, et al.
Published: (2017)

Comparative modelling studies of fruit bromelain using molecular dynamics simulation
by: Abdul Hamid, Azzmer Azzar, et al.
Published: (2020)

Cannot write session to /tmp/vufind_sessions/sess_4oqnmipo29hdan8k01fi065m2f