OcculterCut: A comprehensive survey of AT-rich regions in fungal genomes.
We present a novel method to measure the local GC-content bias in genomes and a survey of published fungal species. The method, enacted as "OcculterCut" (<a href="https://sourceforge.net/projects/occultercut">https://sourceforge.net/projects/occultercut</a>), identifi...
| Main Authors: | Renwick, Alison, Oliver, Richard, Hane, James |
|---|---|
| Format: | Journal Article |
| Published: |
Oxford University Press
2016
|
| Online Access: | http://hdl.handle.net/20.500.11937/5842 |
Similar Items
Overview of genomic and bioinformatic resources for Zymoseptoria.
by: Renwick, Alison, et al.
Published: (2015)
by: Renwick, Alison, et al.
Published: (2015)
CodingQuarry: Highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts
by: Testa, Alison, et al.
Published: (2015)
by: Testa, Alison, et al.
Published: (2015)
Calculating RIP mutation in fungal genomes using RIPCAL
by: Hane, James
Published: (2015)
by: Hane, James
Published: (2015)
Comprehensive annotation of the Parastagonospora nodorum reference genome using next-generation genomics, transcriptomics and proteogenomics
by: Syme, Robert, et al.
Published: (2016)
by: Syme, Robert, et al.
Published: (2016)
RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
by: Hane, J., et al.
Published: (2008)
by: Hane, J., et al.
Published: (2008)
Genomic tillage and the harvest of fungal phytopathogens
by: Oliver, Richard
Published: (2012)
by: Oliver, Richard
Published: (2012)
Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity
by: Moolhuijzen, Paula, et al.
Published: (2018)
by: Moolhuijzen, Paula, et al.
Published: (2018)
A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres
by: Ellwood, Simon, et al.
Published: (2010)
by: Ellwood, Simon, et al.
Published: (2010)
Genomic and Comparative Analysis of the Class Dothideomycetes
by: Hane, James, et al.
Published: (2011)
by: Hane, James, et al.
Published: (2011)
Effector gene prediction from fungal pathogen genome assemblies
by: Testa, Alison Clare
Published: (2016)
by: Testa, Alison Clare
Published: (2016)
William Lethaby, symbolism and the occult
by: Sangha, Amandeep K.
Published: (2017)
by: Sangha, Amandeep K.
Published: (2017)
Resequencing and comparative genomics of stagonospora nodorum: Sectional gene absence and effector discovery
by: Syme, Robert, et al.
Published: (2013)
by: Syme, Robert, et al.
Published: (2013)
Repeat-Induced Point Mutation in Fungi: A Fungal-Specific Endogenous Mutagenesis Process
by: Hane, James, et al.
Published: (2015)
by: Hane, James, et al.
Published: (2015)
Pan-parastagonospora comparative genome analysis-effector prediction and genome evolution
by: Syme, Robert, et al.
Published: (2018)
by: Syme, Robert, et al.
Published: (2018)
Occult hepatitis B infection among vaccinated cohort
by: Shuaibu, Hudu Abdullahi, et al.
Published: (2013)
by: Shuaibu, Hudu Abdullahi, et al.
Published: (2013)
Molecular dissection of fungal phytopathogenicity
by: Oliver, Richard, et al.
Published: (1995)
by: Oliver, Richard, et al.
Published: (1995)
Fecal occult blood testing when colonoscopy capacity is limited
by: Wilschut, J., et al.
Published: (2011)
by: Wilschut, J., et al.
Published: (2011)
Stability of CubeSat Clocks and Their Impacts on GNSS Radio Occultation
by: Allahvirdizadeh, Amir, et al.
Published: (2022)
by: Allahvirdizadeh, Amir, et al.
Published: (2022)
Metabolomics and proteomics to dissect fungal phytopathogenicity
by: Tan, Kar-Chun, et al.
Published: (2014)
by: Tan, Kar-Chun, et al.
Published: (2014)
Colorectal cancer screening using immunochemical fecal occult blood test
by: Tan, Mun Chieng, et al.
Published: (2017)
by: Tan, Mun Chieng, et al.
Published: (2017)
Genome mining for production of nutritionally rich palm oil
by: Abdullah, Siti Nor Akmar, et al.
Published: (2017)
by: Abdullah, Siti Nor Akmar, et al.
Published: (2017)
Genomic Analysis of Fungal Species Causing Ascochyta Blight in Field Pea
by: Turo, Chala Jefuka
Published: (2016)
by: Turo, Chala Jefuka
Published: (2016)
Fungal plant pathogenesis mediated by effectors
by: De Wit, P., et al.
Published: (2016)
by: De Wit, P., et al.
Published: (2016)
Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8
by: Hane, James, et al.
Published: (2014)
by: Hane, James, et al.
Published: (2014)
In situ PCR for detection and identification of fungal species
by: Bindslev, L., et al.
Published: (2002)
by: Bindslev, L., et al.
Published: (2002)
The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species.
by: Pattemore, J., et al.
Published: (2014)
by: Pattemore, J., et al.
Published: (2014)
Characterization of occult hepatitis c virus (hcv) infection
among hemodialysis patient
by: Abdul Rahman, Siti Nurul Fazlin, et al.
Published: (2017)
by: Abdul Rahman, Siti Nurul Fazlin, et al.
Published: (2017)
Impact of Horizontal Gene Transfer on Virulence of Fungal Pathogens of Plants
by: Howlett, B., et al.
Published: (2012)
by: Howlett, B., et al.
Published: (2012)
Regional development and planning challenges in resource-rich regions
by: Glasson, John
Published: (2015)
by: Glasson, John
Published: (2015)
Molecular Biology of Fungal Plant Pathogenicity
by: Oliver, Richard, et al.
Published: (1991)
by: Oliver, Richard, et al.
Published: (1991)
Proteinaceous necrotrophic effectors in fungal virulence
by: Tan, Kar-Chun, et al.
Published: (2010)
by: Tan, Kar-Chun, et al.
Published: (2010)
Comprehensive genomic characterization of squamous cell lung cancers
by: Hammerman, P., et al.
Published: (2012)
by: Hammerman, P., et al.
Published: (2012)
GNSS radio occultation in-filling of the African radiosonde data gaps reveals drivers of tropopause climate variability
by: Ding, Tong, et al.
Published: (2022)
by: Ding, Tong, et al.
Published: (2022)
Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors
by: Sperschneider, J., et al.
Published: (2015)
by: Sperschneider, J., et al.
Published: (2015)
Reference Genome Assembly for Australian Ascochyta rabiei Isolate ArME14
by: Shah, R.M., et al.
Published: (2020)
by: Shah, R.M., et al.
Published: (2020)
Arabidopsis pathology breathes new life into the necrotrophs-versus-biotrophs classification of fungal pathogens
by: Oliver, Richard, et al.
Published: (2004)
by: Oliver, Richard, et al.
Published: (2004)
Proteomic techniques for plant-fungal interactions
by: Vincent, D., et al.
Published: (2012)
by: Vincent, D., et al.
Published: (2012)
A model system for the study of plant-fungal interactions: Tomato leaf mould caused by Cladosporium fulvum
by: Oliver, Richard
Published: (1992)
by: Oliver, Richard
Published: (1992)
Functional characterisation of glyoxalase I from the fungal wheat pathogen Stagonospora nodorum
by: Solomon, P., et al.
Published: (2004)
by: Solomon, P., et al.
Published: (2004)
How many types of fungal & oomycete phytopathogens are there? Catastrophy for the bio/hemi/necrotroph divisions
by: Hane, J., et al.
Published: (2018)
by: Hane, J., et al.
Published: (2018)
Similar Items
-
Overview of genomic and bioinformatic resources for Zymoseptoria.
by: Renwick, Alison, et al.
Published: (2015) -
CodingQuarry: Highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts
by: Testa, Alison, et al.
Published: (2015) -
Calculating RIP mutation in fungal genomes using RIPCAL
by: Hane, James
Published: (2015) -
Comprehensive annotation of the Parastagonospora nodorum reference genome using next-generation genomics, transcriptomics and proteogenomics
by: Syme, Robert, et al.
Published: (2016) -
RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
by: Hane, J., et al.
Published: (2008)