Using a butterflyfish genome as a general tool for RAD-Seq studies in specialized reef fish
Data from a large-scale restriction site associated DNA (RAD-Seq) study of nine butterflyfish species in the Red Sea and Arabian Sea provided a means to test the utility of a recently published draft genome (Chaetodon austriacus) and assess apparent bias in this method of isolating nuclear loci. We...
| Main Authors: | Di Battista, Joseph, Saenz-Agudelo, P., Piatek, M., Wang, X., Aranda, M., Berumen, M. |
|---|---|
| Format: | Journal Article |
| Published: |
2017
|
| Online Access: | http://hdl.handle.net/20.500.11937/51387 |
Similar Items
Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): Current status and its characteristics
by: Di Battista, Joseph, et al.
Published: (2018)
by: Di Battista, Joseph, et al.
Published: (2018)
Seascape genetics along environmental gradients in the Arabian Peninsula: Insights from ddRAD sequencing of anemonefishes
by: Saenz-Agudelo, P., et al.
Published: (2015)
by: Saenz-Agudelo, P., et al.
Published: (2015)
Ice ages and butterflyfishes: Phylogenomics elucidates the ecological and evolutionary history of reef fishes in an endemism hotspot
by: Di Battista, Joseph, et al.
Published: (2018)
by: Di Battista, Joseph, et al.
Published: (2018)
Reef fish hybridization: Lessons learnt from butterflyfishes (genus Chaetodon)
by: Montanari, S., et al.
Published: (2012)
by: Montanari, S., et al.
Published: (2012)
Comparative phylogeography of reef fishes from the Gulf of Aden to the Arabian Sea reveals two cryptic lineages
by: Di Battista, Joseph, et al.
Published: (2017)
by: Di Battista, Joseph, et al.
Published: (2017)
Spatial patterns of cryptobenthic coral-reef fishes in the Red Sea
by: Coker, D., et al.
Published: (2017)
by: Coker, D., et al.
Published: (2017)
Fine mapping of the pond snail left-right asymmetry (chirality) locus using RAD-Seq and fibre-FISH
by: Liu, Mengning Maureen, et al.
Published: (2013)
by: Liu, Mengning Maureen, et al.
Published: (2013)
Blinded by the bright: A lack of congruence between colour morphs, phylogeography and taxonomy for a cosmopolitan Indo-Pacific butterflyfish, Chaetodon auriga
by: Di Battista, Joseph, et al.
Published: (2015)
by: Di Battista, Joseph, et al.
Published: (2015)
RAD-Seq derived markers flank the shell colour and
banding loci of the Cepaea nemoralis supergene
by: Richards, Paul M., et al.
Published: (2013)
by: Richards, Paul M., et al.
Published: (2013)
The ears of butterflyfishes (Chaetodontidae): 'Hearing generalists' on noisy coral reefs?
by: Webb, J., et al.
Published: (2010)
by: Webb, J., et al.
Published: (2010)
Phylogeography, population structure and evolution of coral-eating butterflyfishes (Family Chaetodontidae, genus Chaetodon, subgenus Corallochaetodon)
by: Waldrop, E., et al.
Published: (2016)
by: Waldrop, E., et al.
Published: (2016)
Assessing the utility of eDNA as a tool to survey reef-fish communities in the Red Sea
by: DiBattista, J., et al.
Published: (2017)
by: DiBattista, J., et al.
Published: (2017)
When biogeographical provinces collide: hybridization of reef fishes at the crossroads of marine biogeographical provinces in the Arabian Sea
by: Di Battista, Joseph, et al.
Published: (2015)
by: Di Battista, Joseph, et al.
Published: (2015)
Phylogeography of Indo-Pacific reef fishes: Sister wrasses Coris gaimard and C. cuvieri in the Red Sea, Indian Ocean and Pacific Ocean
by: Ahti, P., et al.
Published: (2016)
by: Ahti, P., et al.
Published: (2016)
After continents divide: Comparative phylogeography of reef fishes from the Red Sea and Indian Ocean
by: Di Battista, Joseph, et al.
Published: (2013)
by: Di Battista, Joseph, et al.
Published: (2013)
Seascape genomics reveals fine-scale patterns of dispersal for a reef fish along the ecologically divergent coast of Northwestern Australia
by: Di Battista, Joseph, et al.
Published: (2017)
by: Di Battista, Joseph, et al.
Published: (2017)
Naturally occurring hybrids of coral reef butterflyfishes have similar fitness compared to parental species.
by: Montanari, S., et al.
Published: (2017)
by: Montanari, S., et al.
Published: (2017)
Hybridisation among Butterflyfishes
by: Hobbs, Jean-Paul, et al.
Published: (2014)
by: Hobbs, Jean-Paul, et al.
Published: (2014)
Does genetic distance between parental species influence outcomes of hybridization among coral reef butterflyfishes?
by: Montanari, S., et al.
Published: (2014)
by: Montanari, S., et al.
Published: (2014)
Phylogeography of two closely related Indo-Pacific butterflyfishes reveals divergent evolutionary histories and discordant results from mtDNA and microsatellites
by: Di Battista, Joseph, et al.
Published: (2012)
by: Di Battista, Joseph, et al.
Published: (2012)
SEQ2SEQ++: a multitasking-based seq2seq model to generate meaningful and relevant answers
by: Palasundram, Kulothunkan, et al.
Published: (2021)
by: Palasundram, Kulothunkan, et al.
Published: (2021)
Gut content metabarcoding of specialized feeders is not a replacement for environmental DNA assays of seawater in reef environments
by: DiBattista, Joseph, et al.
Published: (2023)
by: DiBattista, Joseph, et al.
Published: (2023)
Sundaland’s east–west rain forest population structure : variable manifestations in four polytypic bird species examined using RAD-Seq and plumage analyses
by: Haw, Chuan Lim, et al.
Published: (2017)
by: Haw, Chuan Lim, et al.
Published: (2017)
A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea
by: Di Battista, Joseph, et al.
Published: (2015)
by: Di Battista, Joseph, et al.
Published: (2015)
RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting
by: Jadhav, B., et al.
Published: (2019)
by: Jadhav, B., et al.
Published: (2019)
Genetic Analysis of RadB, a Paralogue of the Archaeal Rad51/RecA Homologue, RadA
by: Haldenby, Sam
Published: (2007)
by: Haldenby, Sam
Published: (2007)
Introduction to virtual issue on Red Sea and Western Indian Ocean biogeography
by: Berumen, M., et al.
Published: (2017)
by: Berumen, M., et al.
Published: (2017)
The DNA of coral reef biodiversity: predicting and protecting genetic diversity of reef assemblages
by: Selkoe, K., et al.
Published: (2016)
by: Selkoe, K., et al.
Published: (2016)
Origin-independent replication in Haloferax volcanii: RadA localisation, R-loops, and genomic rearrangements
by: Hodson, Katie
Published: (2023)
by: Hodson, Katie
Published: (2023)
Isolation and characterization of twenty microsatellite markers for the study of hybridization in butterflyfish of the genus Chaetodon
by: Montanari, S., et al.
Published: (2013)
by: Montanari, S., et al.
Published: (2013)
RNA-seq and ChIP-seq as complementary approaches for comprehension of plant transcriptional regulatory mechanism
by: Muhammad, Isiaka Ibrahim, et al.
Published: (2020)
by: Muhammad, Isiaka Ibrahim, et al.
Published: (2020)
Nocturnal relocation of adult and juvenile coral reef fishes in response to reef noise
by: Simpson, S., et al.
Published: (2008)
by: Simpson, S., et al.
Published: (2008)
Population connectivity and the effectiveness of marine protected areas to protect vulnerable, exploited and endemic coral reef fishes at an endemic hotspot
by: van der Meer, M., et al.
Published: (2015)
by: van der Meer, M., et al.
Published: (2015)
Coral reef fish assemblages
by: Saad, Shahbudin
Published: (2011)
by: Saad, Shahbudin
Published: (2011)
Identification of twenty one microsatellite loci for conservation genetic studies of the endemic butterflyfish Chaetodon tricinctus
by: van der Meer, M., et al.
Published: (2012)
by: van der Meer, M., et al.
Published: (2012)
De novo assembly and analysis of RNA-seq data
by: Robertson, G., et al.
Published: (2010)
by: Robertson, G., et al.
Published: (2010)
Co-expression and purification of the RadA recombinase with the RadB paralog from Haloferax volcanii yields heteromeric ring-like structures
by: Patoli, Bushra B., et al.
Published: (2017)
by: Patoli, Bushra B., et al.
Published: (2017)
CodingQuarry: Highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts
by: Testa, Alison, et al.
Published: (2015)
by: Testa, Alison, et al.
Published: (2015)
Exploring the nature of ecological specialization in a coral reef fish community: Morphology, diet and foraging microhabitat use
by: Brandl, S., et al.
Published: (2015)
by: Brandl, S., et al.
Published: (2015)
Estimating the role of three mesopredatory fishes in coral reef food webs at Ningaloo Reef, Western Australia
by: Thillainath, E., et al.
Published: (2015)
by: Thillainath, E., et al.
Published: (2015)
Similar Items
-
Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): Current status and its characteristics
by: Di Battista, Joseph, et al.
Published: (2018) -
Seascape genetics along environmental gradients in the Arabian Peninsula: Insights from ddRAD sequencing of anemonefishes
by: Saenz-Agudelo, P., et al.
Published: (2015) -
Ice ages and butterflyfishes: Phylogenomics elucidates the ecological and evolutionary history of reef fishes in an endemism hotspot
by: Di Battista, Joseph, et al.
Published: (2018) -
Reef fish hybridization: Lessons learnt from butterflyfishes (genus Chaetodon)
by: Montanari, S., et al.
Published: (2012) -
Comparative phylogeography of reef fishes from the Gulf of Aden to the Arabian Sea reveals two cryptic lineages
by: Di Battista, Joseph, et al.
Published: (2017)