Antibody-ligand docking: Insights into peptide-carbohydrate mimicry
Despite the enormous clinical importance for xenotransplantation, very little is known about the 3D structural basis for natural antibody recognition of the major carbohydrate xenoantigen, its derivatives and their peptide counterparts. Fundamentally, understanding the nature of peptide-carbohydrate...
| Main Authors: | Yuriev, E., Sandrin, M., Ramsland, Paul |
|---|---|
| Format: | Journal Article |
| Published: |
Taylor & Francis
2008
|
| Online Access: | http://hdl.handle.net/20.500.11937/45145 |
Similar Items
Carbohydrate-mimetic peptides: structural aspects of mimicry and therapeutic implications
by: Agostino, Mark, et al.
Published: (2011)
by: Agostino, Mark, et al.
Published: (2011)
Molecular docking of carbohydrate ligands to antibodies: Structural validation against crystal structures
by: Agostillo, M., et al.
Published: (2009)
by: Agostillo, M., et al.
Published: (2009)
Peptide inhibitors of xenoreactive antibodies mimic the interaction profile of the native carbohydrate antigens
by: Agostino, Mark, et al.
Published: (2011)
by: Agostino, Mark, et al.
Published: (2011)
Antibody-Carbohydrate Recognition from Docked Ensembles Using the AutoMap Procedure.
by: Dingjan, T., et al.
Published: (2015)
by: Dingjan, T., et al.
Published: (2015)
In silico analysis of antibody-carbohydrate interactions and its application to xenoreactive antibodies
by: Agostino, Mark, et al.
Published: (2009)
by: Agostino, Mark, et al.
Published: (2009)
Docking of carbohydrates into protein binding sites
by: Agostino, Mark, et al.
Published: (2012)
by: Agostino, Mark, et al.
Published: (2012)
Identification of preferred carbohydrate binding modes in xenoreactive antibodies by combining conformational filters and binding site maps
by: Agostino, Mark, et al.
Published: (2010)
by: Agostino, Mark, et al.
Published: (2010)
Carbohydrates in cyberspace
by: Yuriev, E., et al.
Published: (2015)
by: Yuriev, E., et al.
Published: (2015)
Structural biology of carbohydrate xenoantigens
by: Yuriev, E., et al.
Published: (2009)
by: Yuriev, E., et al.
Published: (2009)
Studies on carbohydrate xenoantigens
by: Christiansen, D., et al.
Published: (2012)
by: Christiansen, D., et al.
Published: (2012)
Reply to 'response to Milland et al.: Carbohydrate residues downstream of the terminal gala(1,3)gal epitope modulate the specificity of xenoreactive antibodies'
by: Milland, J., et al.
Published: (2008)
by: Milland, J., et al.
Published: (2008)
Structural biology of antibody recognition of carbohydrate epitopes and potential uses for targeted cancer immunotherapies
by: Dingjan, T., et al.
Published: (2014)
by: Dingjan, T., et al.
Published: (2014)
Latest developments in molecular docking: 2010-2011 in review
by: Yuriev, E., et al.
Published: (2013)
by: Yuriev, E., et al.
Published: (2013)
Structural glycobiology of antibody recognition in xenotransplantation and cancer immunotherapy
by: Agostino, Mark, et al.
Published: (2012)
by: Agostino, Mark, et al.
Published: (2012)
Improvements, trends, and new ideas in molecular docking: 2012-2013 in review
by: Yuriev, E., et al.
Published: (2015)
by: Yuriev, E., et al.
Published: (2015)
Challenges and advances in computational docking: 2009 in review
by: Yuriev, E., et al.
Published: (2011)
by: Yuriev, E., et al.
Published: (2011)
A computational approach for exploring carbohydrate recognition by lectins in innate immunity
by: Agostino, Mark, et al.
Published: (2011)
by: Agostino, Mark, et al.
Published: (2011)
A possible role for metallic ions in the carbohydrate cluster recognition displayed by a lewis Y specific antibody
by: Farrugia, W., et al.
Published: (2009)
by: Farrugia, W., et al.
Published: (2009)
Antibody Recognition of Cancer-Related Gangliosides and Their Mimics Investigated Using in silico Site Mapping
by: Agostino, Mark, et al.
Published: (2012)
by: Agostino, Mark, et al.
Published: (2012)
The carbohydrate-binding promiscuity of Euonymus europaeus lectin is predicted to involve a single binding site
by: Agostino, Mark, et al.
Published: (2015)
by: Agostino, Mark, et al.
Published: (2015)
Altered peptide ligands of myelin basic protein (MBP87-99) conjugated to reduced mannan modulate immune responses in mice
by: Katsara, M., et al.
Published: (2009)
by: Katsara, M., et al.
Published: (2009)
AutoMap: A tool for analyzing protein–ligand recognition using multiple ligand binding modes
by: Agostino, Mark, et al.
Published: (2013)
by: Agostino, Mark, et al.
Published: (2013)
Ligand-protein docking with water molecules
by: Roberts, Benjamin, et al.
Published: (2008)
by: Roberts, Benjamin, et al.
Published: (2008)
Ligand-protein cross-docking with water molecules
by: Thilagavathi, R., et al.
Published: (2010)
by: Thilagavathi, R., et al.
Published: (2010)
Structural glycobiology: applications in organ transplantation
by: Christiansen, D., et al.
Published: (2012)
by: Christiansen, D., et al.
Published: (2012)
Enterovirus specific anti-peptide antibodies
by: Poh, Chit Laa *, et al.
Published: (2015)
by: Poh, Chit Laa *, et al.
Published: (2015)
The control of mimicry by social signals
by: Wang, Yin
Published: (2012)
by: Wang, Yin
Published: (2012)
The evolution of imperfect mimicry in hoverflies
by: Gilbert, Francis
Published: (2004)
by: Gilbert, Francis
Published: (2004)
Brand mimicry of luxury brands
by: Teah, Hui Min
Published: (2013)
by: Teah, Hui Min
Published: (2013)
A double mutation of MBP83-99 peptide induces IL-4 responses and antagonizes IFN-? responses
by: Katsara, M., et al.
Published: (2008)
by: Katsara, M., et al.
Published: (2008)
Mannosylation of mutated MBP83-99 peptides diverts immune responses from Th1 to Th2
by: Katsara, M., et al.
Published: (2008)
by: Katsara, M., et al.
Published: (2008)
SSGARL: hybrid evolutionary computation and reinforcement learning for flexible ligand docking
by: Marlisah, Erzam, et al.
Published: (2014)
by: Marlisah, Erzam, et al.
Published: (2014)
Psoriasis - a report of disease mimicry
by: Shalihin, Mohd Shaiful Ehsan, et al.
Published: (2019)
by: Shalihin, Mohd Shaiful Ehsan, et al.
Published: (2019)
The hoverflies: a case of "poor" mimicry?
by: Grewcock, David A.
Published: (1992)
by: Grewcock, David A.
Published: (1992)
Therapeutic antibodies: Discovery, design and deployment
by: Ramsland, Paul, et al.
Published: (2015)
by: Ramsland, Paul, et al.
Published: (2015)
Non-canonical peptides bound to MHC
by: Day, S., et al.
Published: (2009)
by: Day, S., et al.
Published: (2009)
The Regulation of Peptide Mimotope/Epitope Recognition by Monoclonal Antibodies
by: Smith, Richard Gary
Published: (2002)
by: Smith, Richard Gary
Published: (2002)
Understanding the role of the ‘self’ in the social priming of mimicry
by: Wang, Yin, et al.
Published: (2013)
by: Wang, Yin, et al.
Published: (2013)
Evidence for Batesian mimicry in a polymorphic hoverfly
by: Reader, Tom
Published: (2014)
by: Reader, Tom
Published: (2014)
A mimicry of melioidosis by Klebsiella ozaenae infection
by: Ng, Teck Han, et al.
Published: (2009)
by: Ng, Teck Han, et al.
Published: (2009)
Similar Items
-
Carbohydrate-mimetic peptides: structural aspects of mimicry and therapeutic implications
by: Agostino, Mark, et al.
Published: (2011) -
Molecular docking of carbohydrate ligands to antibodies: Structural validation against crystal structures
by: Agostillo, M., et al.
Published: (2009) -
Peptide inhibitors of xenoreactive antibodies mimic the interaction profile of the native carbohydrate antigens
by: Agostino, Mark, et al.
Published: (2011) -
Antibody-Carbohydrate Recognition from Docked Ensembles Using the AutoMap Procedure.
by: Dingjan, T., et al.
Published: (2015) -
In silico analysis of antibody-carbohydrate interactions and its application to xenoreactive antibodies
by: Agostino, Mark, et al.
Published: (2009)