A critical evaluation of how ancient DNA bulk bone metabarcoding complements traditional morphological analysis of fossil assemblages
When pooled for extraction as a bulk sample, the DNA within morphologically unidentifiable fossil bones can, using next-generation sequencing, yield valuable taxonomic data. This method has been proposed as a means to rapidly and cost-effectively assess general ancient DNA preservation at a site, an...
| Main Authors: | Grealy, Alicia, McDowell, M., Scofield, P., Murray, D., Fusco, D., Haile, J., Prideaux, G., Bunce, Michael |
|---|---|
| Format: | Journal Article |
| Published: |
Pergamon Press
2015
|
| Online Access: | http://hdl.handle.net/20.500.11937/39495 |
Similar Items
Scrapheap Challenge: A novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages
by: Murray, D., et al.
Published: (2013)
by: Murray, D., et al.
Published: (2013)
Tropical ancient DNA from bulk archaeological fish bone reveals the subsistence practices of a historic coastal community in southwest Madagascar
by: Grealy, Alicia Catherine, et al.
Published: (2016)
by: Grealy, Alicia Catherine, et al.
Published: (2016)
An assessment of ancient DNA preservation in Holocene-Pleistocene fossil bone excavated from the world heritage Naracoorte Caves, South Australia
by: Grealy, Alicia, et al.
Published: (2016)
by: Grealy, Alicia, et al.
Published: (2016)
Thorough assessment of DNA preservation from fossil bone and sediments excavated from a late Pleistocenee-Holocene cave deposit on Kangaroo Island, South Australia
by: Haouchar, D., et al.
Published: (2014)
by: Haouchar, D., et al.
Published: (2014)
The Quaternary Biodiversity Crisis Assessed with Bulk Bone Metabarcoding
by: Seersholm, Frederik Valeur
Published: (2020)
by: Seersholm, Frederik Valeur
Published: (2020)
Fossil avian eggshell preserves ancient DNA
by: Oskam, C., et al.
Published: (2010)
by: Oskam, C., et al.
Published: (2010)
Highly skewed sex ratios and biased fossil deposition of moa: ancient DNA provides new insight on New Zealand’s extinct megafauna
by: Allentoft, M., et al.
Published: (2010)
by: Allentoft, M., et al.
Published: (2010)
Time to spread your wings: A review of the avian ancient DNA field
by: Grealy, Alicia, et al.
Published: (2017)
by: Grealy, Alicia, et al.
Published: (2017)
The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils
by: Allentoft, M., et al.
Published: (2012)
by: Allentoft, M., et al.
Published: (2012)
Metabarcoding avian diets at airports: implications for birdstrike hazard management planning
by: Coghlan, Megan, et al.
Published: (2013)
by: Coghlan, Megan, et al.
Published: (2013)
New approaches to ancient DNA: using novel substrates to characterise DNA preservation and past biodiversity in warm-climate ecosystems
by: Grealy, Alicia Catherine
Published: (2016)
by: Grealy, Alicia Catherine
Published: (2016)
Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell
by: Grealy, Alicia Catherine, et al.
Published: (2017)
by: Grealy, Alicia Catherine, et al.
Published: (2017)
DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea)
by: Berry, Tina, et al.
Published: (2017)
by: Berry, Tina, et al.
Published: (2017)
DNA metabarcoding assays reveal a diverse prey assemblage for Mobula rays in the Bohol Sea, Philippines
by: Bessey, Cindy, et al.
Published: (2019)
by: Bessey, Cindy, et al.
Published: (2019)
The identity of the Depuch Island rock-wallaby revealed through ancient DNA
by: Haouchar, D., et al.
Published: (2013)
by: Haouchar, D., et al.
Published: (2013)
Ancient DNA reveals complexity in the evolutionary history and taxonomy of the endangered Australian brush-tailed bettongs (Bettongia: Marsupialia: Macropodidae: Potoroinae)
by: Haouchar, D., et al.
Published: (2016)
by: Haouchar, D., et al.
Published: (2016)
Comparison of morphological and DNA metabarcoding analyses of diets in exploited marine fishes
by: Berry, O., et al.
Published: (2015)
by: Berry, O., et al.
Published: (2015)
Ancient DNA microsatellite analyses of the extinct New Zealand giant moa (Dinornis robustus) identify relatives within a single fossil site.
by: Allentoft, M., et al.
Published: (2015)
by: Allentoft, M., et al.
Published: (2015)
DNA Extraction from Fossil Eggshell
by: Oskam, C., et al.
Published: (2012)
by: Oskam, C., et al.
Published: (2012)
Novel mitochondrial haplotype of spotted-tailed quoll (Dasyurus maculatus) present on Kangaroo Island (South Australia) prior to extirpation
by: Grealy, A., et al.
Published: (2020)
by: Grealy, A., et al.
Published: (2020)
Ancient DNA analyses of early archaeological sites in New Zealand reveal extreme exploitation of moa (Aves: Dinornithiformes) at all life stages
by: Oskam, C., et al.
Published: (2012)
by: Oskam, C., et al.
Published: (2012)
Profiling the Dead: Generating Microsatellite Data from Fossil Bones of Extinct Megafauna—Protocols, Problems, and Prospects
by: Allentoft, M., et al.
Published: (2011)
by: Allentoft, M., et al.
Published: (2011)
Morphological and molecular evidence supports specific recognition of the recently extinct Bettongia anhydra (Marsupialia: Macropodidae)
by: McDowell, M., et al.
Published: (2015)
by: McDowell, M., et al.
Published: (2015)
Tube fossils from gossanites of the Urals VHMS deposits, Russia: Authigenic mineral assemblages and trace element distributions
by: Ayupova, N., et al.
Published: (2017)
by: Ayupova, N., et al.
Published: (2017)
Ancient DNA preserved in small bone fragments from the P.W. Lund collection
by: Seersholm, Frederik V., et al.
Published: (2021)
by: Seersholm, Frederik V., et al.
Published: (2021)
Ancient DNA shows high faunal diversity in the Lesser Caucasus during the Late Pleistocene
by: Antonosyan, M., et al.
Published: (2019)
by: Antonosyan, M., et al.
Published: (2019)
Thermal stability of dialkylimidazolium tetrafluoroborate and hexafluorophosphate ionic liquids: ex situ bulk heating to complement in situ mass spectrometry
by: Clarke, Coby James, et al.
Published: (2018)
by: Clarke, Coby James, et al.
Published: (2018)
Subsistence practices, past biodiversity, and anthropogenic impacts revealed by New Zealand-wide ancient DNA survey
by: Seersholm, F., et al.
Published: (2018)
by: Seersholm, F., et al.
Published: (2018)
High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens
by: Murray, D., et al.
Published: (2012)
by: Murray, D., et al.
Published: (2012)
From bone to brawn: ancient fish show off their muscles
by: Trinajstic, Kate
Published: (2013)
by: Trinajstic, Kate
Published: (2013)
Multi-analytical approach to zooarchaeological assemblages elucidates Late Holocene coastal lifeways in southwest Madagascar
by: Douglass, K., et al.
Published: (2017)
by: Douglass, K., et al.
Published: (2017)
Action Learning as a Complement to the Coaching Ethos
by: Forman, Dawn, et al.
Published: (2013)
by: Forman, Dawn, et al.
Published: (2013)
Three-dimensional synchrotron virtual paleohistology: A new insight into the world of fossil bone microstructures
by: Sanchez, S., et al.
Published: (2012)
by: Sanchez, S., et al.
Published: (2012)
Environmental DNA metabarcoding studies are critically affected by substrate selection
by: Koziol, A., et al.
Published: (2018)
by: Koziol, A., et al.
Published: (2018)
Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity
by: Stat, Michael, et al.
Published: (2018)
by: Stat, Michael, et al.
Published: (2018)
Testing multiple substrates for terrestrial biodiversity monitoring using environmental DNA metabarcoding
by: Van Der Heyde, Mieke, et al.
Published: (2020)
by: Van Der Heyde, Mieke, et al.
Published: (2020)
Dimerization of ABCG2 analysed by bimolecular fluorescence complementation
by: Haider, Ameena J., et al.
Published: (2011)
by: Haider, Ameena J., et al.
Published: (2011)
DNA metabarcoding—a new approach to fauna monitoring in mine site restoration
by: Fernandes, K., et al.
Published: (2018)
by: Fernandes, K., et al.
Published: (2018)
The living fossil (horseshoe crab)
Published: (2011)
Published: (2011)
Applications of molecular fossils in lacustrinestratigraphy
by: Wang, Guangli, et al.
Published: (2010)
by: Wang, Guangli, et al.
Published: (2010)
Similar Items
-
Scrapheap Challenge: A novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages
by: Murray, D., et al.
Published: (2013) -
Tropical ancient DNA from bulk archaeological fish bone reveals the subsistence practices of a historic coastal community in southwest Madagascar
by: Grealy, Alicia Catherine, et al.
Published: (2016) -
An assessment of ancient DNA preservation in Holocene-Pleistocene fossil bone excavated from the world heritage Naracoorte Caves, South Australia
by: Grealy, Alicia, et al.
Published: (2016) -
Thorough assessment of DNA preservation from fossil bone and sediments excavated from a late Pleistocenee-Holocene cave deposit on Kangaroo Island, South Australia
by: Haouchar, D., et al.
Published: (2014) -
The Quaternary Biodiversity Crisis Assessed with Bulk Bone Metabarcoding
by: Seersholm, Frederik Valeur
Published: (2020)