Molecular modeling of hydration in drug design
The accurate prediction of the binding mode and affinity of a drug molecule to its putative receptor is crucial for successful drug design and optimization. Modeling the role of the aqueous solvent in ligand-protein interactions is one of the key components. Three main computational techniques have...
| Main Author: | Mancera, Ricardo |
|---|---|
| Format: | Journal Article |
| Published: |
Current Drugs Ltd.
2007
|
| Online Access: | http://hdl.handle.net/20.500.11937/31966 |
Similar Items
Molecular dynamics simulations of the interactions of DMSO, mono- and polyhydroxylated cryosolvents with a hydrated phospholipid bilayer
by: Malajczuk, Chris, et al.
Published: (2013)
by: Malajczuk, Chris, et al.
Published: (2013)
Influence of Bilayer Size and Number in Multi-Bilayer DOPC Simulations at Full and Low Hydration
by: Stachura, S., et al.
Published: (2019)
by: Stachura, S., et al.
Published: (2019)
Heparin/heparan sulphate-based drugs
by: Gandhi, Neha, et al.
Published: (2010)
by: Gandhi, Neha, et al.
Published: (2010)
New anti-tuberculosis drugs with novel mechanisms of action
by: Rivers, E., et al.
Published: (2008)
by: Rivers, E., et al.
Published: (2008)
Developing drugs from sugars: current state of glycosaminoglycan-derived therapeutics
by: Gandhi, Neha, et al.
Published: (2012)
by: Gandhi, Neha, et al.
Published: (2012)
New anti-tuberculosis drugs in clinical trials with novel mechanisms of action
by: Rivers, E., et al.
Published: (2008)
by: Rivers, E., et al.
Published: (2008)
Structure, dynamics and hydration in drug-DNA recognition
by: Williams, Huw Edward Llewelyn
Published: (2001)
by: Williams, Huw Edward Llewelyn
Published: (2001)
The molecular binding interactions of inhibitors and activators of phosphoenolpyruvate carboxylase
by: Mancera, Ricardo, et al.
Published: (2005)
by: Mancera, Ricardo, et al.
Published: (2005)
Hydration, Hydration, Hydration
by: Miller, Veronica, et al.
Published: (2010)
by: Miller, Veronica, et al.
Published: (2010)
Molecular mechanism of the synergistic effects of vitrification solutions on the stability of phospholipid bilayers
by: Hughes, Z., et al.
Published: (2014)
by: Hughes, Z., et al.
Published: (2014)
Molecular dynamics simulations of mixed DOPC-ß-sitosterol bilayers and their interactions with DMSO
by: Hughes, Zak, et al.
Published: (2013)
by: Hughes, Zak, et al.
Published: (2013)
Platelet endothelial cell adhesion molecule (PECAM-1) and its interactions with glycosaminoglycans 1. Molecular modelling studies
by: Gandhi, Neha, et al.
Published: (2008)
by: Gandhi, Neha, et al.
Published: (2008)
Characterization of the Glass Transition of Water Predicted by Molecular Dynamics Simulations Using Nonpolarizable Intermolecular Potentials
by: Kreck, Cara, et al.
Published: (2014)
by: Kreck, Cara, et al.
Published: (2014)
Including Tightly-Bound Water Molecules in de Novo Drug Design. Exemplification through the in Silico Generation of Poly(ADP-ribose)polymerase Ligands
by: Mancera, Ricardo, et al.
Published: (2005)
by: Mancera, Ricardo, et al.
Published: (2005)
Molecular dynamics simulations of CXCL-8 and its interactions with a receptor peptide, heparin fragments and sulfated cyclitols.
by: Gandhi, Neha, et al.
Published: (2011)
by: Gandhi, Neha, et al.
Published: (2011)
Molecular mechanism of solvent cryoprotection in aqueous DMSO solutions
by: Mandumpal, Jestin, et al.
Published: (2011)
by: Mandumpal, Jestin, et al.
Published: (2011)
Molecular dynamics simulations of a DMSO/water mixture using the AMBER force field
by: Stachura, S., et al.
Published: (2018)
by: Stachura, S., et al.
Published: (2018)
Molecular dynamics simulations of ligand-induced backbone conformational changes in the binding site of the periplasmic lysine-, arginine-, ornithine-binding protein
by: Yang, A., et al.
Published: (2008)
by: Yang, A., et al.
Published: (2008)
Can current force fields reproduce ring puckering in 2-O-sulfo-?-L-iduronic acid? A molecular dynamics simulation study
by: Gandhi, Neha, et al.
Published: (2010)
by: Gandhi, Neha, et al.
Published: (2010)
Molecular dynamics simulations of the interactions of DMSO with DPPC and DOPC phospholipid membranes
by: Hughes, Zak, et al.
Published: (2012)
by: Hughes, Zak, et al.
Published: (2012)
Prediction of the glass transition in aqueous solutions of simple amides by molecular dynamics simulations
by: Kreck, Cara, et al.
Published: (2011)
by: Kreck, Cara, et al.
Published: (2011)
Molecular dynamics simulation of the phosphorylation-induced conformational changes of a tau peptide fragment
by: Lyons, Albert, et al.
Published: (2014)
by: Lyons, Albert, et al.
Published: (2014)
The effects of cryosolvents on DOPC-ß-sitosterol bilayers determined from molecular dynamics simulations
by: Hughes, Zak, et al.
Published: (2013)
by: Hughes, Zak, et al.
Published: (2013)
Atomistic molecular dynamics simulations of bioactive engrailed 1 interference peptides (EN1-iPeps)
by: Gandhi, Neha, et al.
Published: (2018)
by: Gandhi, Neha, et al.
Published: (2018)
Molecular dynamics simulation of tau peptides for the investigation of conformational changes induced by specific phosphorylation patterns
by: Gandhi, N., et al.
Published: (2017)
by: Gandhi, N., et al.
Published: (2017)
Guest Editorial
by: Mancera, Ricardo
Published: (2008)
by: Mancera, Ricardo
Published: (2008)
Development and application of site mapping methods for the design of glycosaminoglycans
by: Agostino, Mark, et al.
Published: (2014)
by: Agostino, Mark, et al.
Published: (2014)
The effect of tightly-bound water molecules on scaffold diversity in computer-aided de novo ligand design of CDK2 inhibitors
by: Garcia-sosa, A., et al.
Published: (2006)
by: Garcia-sosa, A., et al.
Published: (2006)
Characterisation of the structure and oligomerisation of islet amyloid polypeptides (IAPP): A review of molecular dynamics simulation studies
by: Moore, S., et al.
Published: (2018)
by: Moore, S., et al.
Published: (2018)
Understanding insulin endocrinology in decapod crustacea: Molecular modelling characterization of an insulin-binding protein and insulin-like peptides in the eastern spiny lobster, Sagmariasus verreauxi
by: Chandler, J., et al.
Published: (2017)
by: Chandler, J., et al.
Published: (2017)
Designing Single Polymer Molecules as Gas Hydrate and Corrosion Inhibitors
by: Sheng, Qi
Published: (2018)
by: Sheng, Qi
Published: (2018)
Molecular interaction analysis to design new drug candidates for Lysosomal storage disease
by: Noorbatcha, Ibrahim Ali, et al.
Published: (2011)
by: Noorbatcha, Ibrahim Ali, et al.
Published: (2011)
Molecular Dynamics Simulation Studies on the Stability and Dissociation of Clathrate Hydrates of Single and Double Greenhouse Gases
by: Sinehbaghizadeh, Saeid, et al.
Published: (2022)
by: Sinehbaghizadeh, Saeid, et al.
Published: (2022)
A comprehensive review on molecular dynamics simulation studies of phenomena and characteristics associated with clathrate hydrates
by: Sinehbaghizadeh, Saeid, et al.
Published: (2022)
by: Sinehbaghizadeh, Saeid, et al.
Published: (2022)
Hydrate Phase Equilibria for Methyldiethanolamine and Empirical Modeling for Prediction
by: Alef, K., et al.
Published: (2018)
by: Alef, K., et al.
Published: (2018)
Modelling the effects of salt solutions on the hydration of calcium ions
by: Di Tommaso, D., et al.
Published: (2014)
by: Di Tommaso, D., et al.
Published: (2014)
Polypeptide and Protein Modeling for Drug Design
by: O'Mara, M., et al.
Published: (2014)
by: O'Mara, M., et al.
Published: (2014)
Does the sars-cov-2 spike protein receptor binding domain interact effectively with the dpp4 (Cd26) receptor? A molecular docking study
by: Cameron, Kirsten, et al.
Published: (2021)
by: Cameron, Kirsten, et al.
Published: (2021)
Thermodynamics of Inorganic Hydration and of Humidity Control, with an Extensive Database of Salt Hydrate Pairs
by: Glasser, Leslie
Published: (2014)
by: Glasser, Leslie
Published: (2014)
Molecular Dynamics Visualization (MDV): Stereoscopic 3D Display of Biomolecular Structure and Interactions Using the Unity Game Engine
by: Wiebrands, Michael, et al.
Published: (2018)
by: Wiebrands, Michael, et al.
Published: (2018)
Similar Items
-
Molecular dynamics simulations of the interactions of DMSO, mono- and polyhydroxylated cryosolvents with a hydrated phospholipid bilayer
by: Malajczuk, Chris, et al.
Published: (2013) -
Influence of Bilayer Size and Number in Multi-Bilayer DOPC Simulations at Full and Low Hydration
by: Stachura, S., et al.
Published: (2019) -
Heparin/heparan sulphate-based drugs
by: Gandhi, Neha, et al.
Published: (2010) -
New anti-tuberculosis drugs with novel mechanisms of action
by: Rivers, E., et al.
Published: (2008) -
Developing drugs from sugars: current state of glycosaminoglycan-derived therapeutics
by: Gandhi, Neha, et al.
Published: (2012)