Genotype × age interaction in human transcriptional ageing

Individual differences in biological ageing (i.e., the rate of physiological response to the passage of time) may be due in part to genotype-specific variation in gene action. However, the sources of heritable variation in human age-related gene expression profiles are largely unknown. We have profi...

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Bibliographic Details
Main Authors: Kent, J., Göring, H., Charlesworth, J., Drigalenko, E., Diego, V., Curran, J., Johnson, M., Dyer, T., Cole, S., Jowett, J., Mahaney, M., Comuzzie, A., Almasy, L., Moses, Eric, Blangero, J., Williams-Blangero, S.
Format: Journal Article
Published: 2012
Online Access:http://hdl.handle.net/20.500.11937/2992
Description
Summary:Individual differences in biological ageing (i.e., the rate of physiological response to the passage of time) may be due in part to genotype-specific variation in gene action. However, the sources of heritable variation in human age-related gene expression profiles are largely unknown. We have profiled genome-wide expression in peripheral blood mononuclear cells from 1240 individuals in large families and found 4472 human autosomal transcripts, representing ~4349 genes, significantly correlated with age. We identified 623 transcripts that show genotype by age interaction in addition to a main effect of age, defining a large set of novel candidates for characterization of the mechanisms of differential biological ageing. We applied a novel SNP genotype × age interaction test to one of these candidates, the ubiquilin-like gene UBQLNL, and found evidence of joint cis-association and genotype by age interaction as well as trans-genotype by age interaction for UBQLNL expression. Both UBQLNL expression levels at recruitment and cis genotype are associated with longitudinal cancer risk in our study cohort.