Optimization of protein-protein docking for predicting Fc-protein interactions

QR Code

Optimization of protein-protein docking for predicting Fc-protein interactions

The antibody crystallizable fragment (Fc) is recognized by effector proteins as part of the immune system. Pathogens produce proteins that bind Fc in order to subvert or evade the immune response. The structural characterization of the determinants of Fc-protein association is essential to improve o...

Full description

Bibliographic Details
Main Authors:	Agostino, Mark, Mancera, R., Ramsland, P., Fernández-Recio, J.
Format:	Journal Article
Published:	John Wiley & Sons Ltd. 2016
Online Access:	http://hdl.handle.net/20.500.11937/28838

Similar Items

Docking of carbohydrates into protein binding sites
by: Agostino, Mark, et al.
Published: (2012)

Ligand-protein docking with water molecules
by: Roberts, Benjamin, et al.
Published: (2008)

Ligand-protein cross-docking with water molecules
by: Thilagavathi, R., et al.
Published: (2010)

Docking Of Protein With Flavonoids.
by: Ng, Pei Ling, et al.
Published: (2003)

AutoMap: A tool for analyzing protein–ligand recognition using multiple ligand binding modes
by: Agostino, Mark, et al.
Published: (2013)

The Structure of Glycosaminoglycans and their Interactions with Proteins
by: Gandhi, Neha, et al.
Published: (2008)

An Fc?RIIa-binding peptide that mimics the interaction between Fc?RIIa and IgG
by: Cendron, A., et al.
Published: (2008)

One-class support vector machines for protein-protein interactions prediction
by: Alashwal, H., et al.
Published: (2006)

The development of machine learning based software for predicting protein-protein interactions and protein function from protein primary structure
by: Othman, Muhamad Razib, et al.
Published: (2007)

Predicting protein-protein interactions as a one-class classification problem
by: Alashwal, Hany, et al.
Published: (2006)

Free energy calculations of glycosaminoglycan-protein interactions
by: Gandhi, Neha, et al.
Published: (2009)

One-Class Classifier to Predict Protein-Protein Interactions based on Hydrophobibity Properties
by: Alashwal, Hany Taher Ahmed, et al.
Published: (2006)

Cardiolipin is required for membrane docking of mitochondrial ribosomes and protein synthesis
by: Lee, R.G., et al.
Published: (2020)

Challenges and advances in computational docking: 2009 in review
by: Yuriev, E., et al.
Published: (2011)

An Improved Ant Colony Optimization Algorithm for Clustering Proteins in Protein Interaction Network
by: Jamaludin, Sallim, et al.
Published: (2009)

Macrocyclic peptides as inhibitors of protein-protein interactions
by: Smith, Frances
Published: (2020)

Characterisation of essential proteins in proteins interaction networks
by: Sakhinah Abu Bakar,, et al.
Published: (2013)

Utilizing shared interacting domain patterns and Gene Ontology information to improve protein-protein interaction prediction
by: Roslan, Rosfuzah, et al.
Published: (2010)

Utilizing shared interacting domain patterns and gene ontology information to improve protein–protein interaction prediction
by: Roslan, Rosfuzah, et al.
Published: (2010)

Predicted interaction of human Ribosomal Protein S15 with Fragile X Mental Retardation Protein
by: Ui-Hang, Edmund Sim, et al.
Published: (2016)

Predicting proteins interactions from protein sequence features using support vector machines
by: Alashwal, Hany Taher Ahmed, et al.
Published: (2017)

Support vector machines for predicting protein-protein interactions using domains and hydrophobicity features
by: Alashwal, Hany Taher Ahmed, et al.
Published: (2006)

Bioinformatics Analysis of the Ribosomal Proteins, RPL27, RPL37a and RPL41: 3-D Protein Modeling and Protein-protein Interaction Prediction
by: Chan, Stella Li Li, et al.
Published: (2013)

Bioinformatics analysis of the ribosomal protein, Rpl27, Rpl37a and Rpl41:3-D protein modeling and protein-protein interaction prediction
by: Chan, Stella Li Li
Published: (2012)

Carbene footprinting accurately maps binding sites in protein–ligand and protein–protein interactions
by: Manzi, Lucio, et al.
Published: (2016)

Protein-protein interactions during Japanese encephalitis infection
by: Magdline Sia, Henry Sum.
Published: (2007)

Comparison of domain and hydrophobicity features for the prediction of protein-protein interactions using support vector machines
by: Alashwal, Hany, et al.
Published: (2007)

Prediction of heparin binding sites in bone morphogenetic proteins (BMPs)
by: Gandhi, Neha, et al.
Published: (2012)

Does the sars-cov-2 spike protein receptor binding domain interact effectively with the dpp4 (Cd26) receptor? A molecular docking study
by: Cameron, Kirsten, et al.
Published: (2021)

Inhibiting protein–protein interactions in telomeres as an approach to cancer chemotherapy
by: Salih, Twana
Published: (2016)

Heuristic-Based Ant Colony Optimization Algorithm For Protein Functional Module Detection In Protein Interaction Network
by: Sallim, Jamaludin
Published: (2017)

Heuristic-Based Ant Colony Optimization Algorithm For Protein Functional Module Detection In Protein Interaction Network
by: SALLIM, JAMALUDIN
Published: (2017)

FIS-PNN: a hybrid computational method for protein-protein interactions prediction using the secondary structure information
by: Sakhinah Abu Bakar,, et al.
Published: (2012)

Assessment of the protein interaction between coagulation factor XII and corn trypsin inhibitor by molecular docking and biochemical validation
by: Hamad, Badraldin K., et al.
Published: (2017)

Current progress on the computational methods for prediction of host-pathogen protein-protein interaction in the Ganoderma boninense-oil palm pathosystem
by: Khairi, Mohamad Hazwan Fikri, et al.
Published: (2024)

Small molecule inhibitors of the p53-MDM2 protein-protein interaction
by: Fitzgerald, Ross Patrick
Published: (2011)

Application of Markov Stability for graph-based clustering on protein-protein interaction networks
by: von Holy, Peter
Published: (2023)

In silico elucidation of protein-protein interaction network in fish pathogen Flavobacterium columnare
by: Pershia Nematiasgarabad,, et al.
Published: (2024)

Protein-Hydrocolloids Interactions in "Keropok Lekor"
by: Kaw, Zay Ya
Published: (2004)

Molecular docking-guided optimisation of an Aloe Vera-Based buccal protein delivery system
by: Huay, Chin Heng, et al.
Published: (2025)

Cannot write session to /tmp/vufind_sessions/sess_k03n723jges2sf2q76f9j41p3v