Antibody-Carbohydrate Recognition from Docked Ensembles Using the AutoMap Procedure.
Carbohydrate-protein recognition is vital to many processes in health and disease. In particular, elucidation of the structural basis of carbohydrate binding is important to the development of oligosaccharides and oligosaccharide mimetics as vaccines for infectious diseases and cancer. Computational...
| Main Authors: | Dingjan, T., Agostino, M., Ramsland, Paul, Yuriev, E. |
|---|---|
| Format: | Journal Article |
| Published: |
2015
|
| Online Access: | http://hdl.handle.net/20.500.11937/19193 |
Similar Items
AutoMap: A tool for analyzing protein–ligand recognition using multiple ligand binding modes
by: Agostino, Mark, et al.
Published: (2013)
by: Agostino, Mark, et al.
Published: (2013)
Antibody-ligand docking: Insights into peptide-carbohydrate mimicry
by: Yuriev, E., et al.
Published: (2008)
by: Yuriev, E., et al.
Published: (2008)
Docking of carbohydrates into protein binding sites
by: Agostino, Mark, et al.
Published: (2012)
by: Agostino, Mark, et al.
Published: (2012)
Structural biology of antibody recognition of carbohydrate epitopes and potential uses for targeted cancer immunotherapies
by: Dingjan, T., et al.
Published: (2014)
by: Dingjan, T., et al.
Published: (2014)
Molecular docking of carbohydrate ligands to antibodies: Structural validation against crystal structures
by: Agostillo, M., et al.
Published: (2009)
by: Agostillo, M., et al.
Published: (2009)
In silico analysis of antibody-carbohydrate interactions and its application to xenoreactive antibodies
by: Agostino, Mark, et al.
Published: (2009)
by: Agostino, Mark, et al.
Published: (2009)
Antibody Recognition of Cancer-Related Gangliosides and Their Mimics Investigated Using in silico Site Mapping
by: Agostino, Mark, et al.
Published: (2012)
by: Agostino, Mark, et al.
Published: (2012)
Identification of preferred carbohydrate binding modes in xenoreactive antibodies by combining conformational filters and binding site maps
by: Agostino, Mark, et al.
Published: (2010)
by: Agostino, Mark, et al.
Published: (2010)
The carbohydrate-binding promiscuity of Euonymus europaeus lectin is predicted to involve a single binding site
by: Agostino, Mark, et al.
Published: (2015)
by: Agostino, Mark, et al.
Published: (2015)
A computational approach for exploring carbohydrate recognition by lectins in innate immunity
by: Agostino, Mark, et al.
Published: (2011)
by: Agostino, Mark, et al.
Published: (2011)
Peptide inhibitors of xenoreactive antibodies mimic the interaction profile of the native carbohydrate antigens
by: Agostino, Mark, et al.
Published: (2011)
by: Agostino, Mark, et al.
Published: (2011)
Carbohydrates in cyberspace
by: Yuriev, E., et al.
Published: (2015)
by: Yuriev, E., et al.
Published: (2015)
Structural glycobiology of antibody recognition in xenotransplantation and cancer immunotherapy
by: Agostino, Mark, et al.
Published: (2012)
by: Agostino, Mark, et al.
Published: (2012)
Challenges and advances in computational docking: 2009 in review
by: Yuriev, E., et al.
Published: (2011)
by: Yuriev, E., et al.
Published: (2011)
Structural biology of carbohydrate xenoantigens
by: Yuriev, E., et al.
Published: (2009)
by: Yuriev, E., et al.
Published: (2009)
Latest developments in molecular docking: 2010-2011 in review
by: Yuriev, E., et al.
Published: (2013)
by: Yuriev, E., et al.
Published: (2013)
A possible role for metallic ions in the carbohydrate cluster recognition displayed by a lewis Y specific antibody
by: Farrugia, W., et al.
Published: (2009)
by: Farrugia, W., et al.
Published: (2009)
Carbohydrate-mimetic peptides: structural aspects of mimicry and therapeutic implications
by: Agostino, Mark, et al.
Published: (2011)
by: Agostino, Mark, et al.
Published: (2011)
Improvements, trends, and new ideas in molecular docking: 2012-2013 in review
by: Yuriev, E., et al.
Published: (2015)
by: Yuriev, E., et al.
Published: (2015)
Reply to 'response to Milland et al.: Carbohydrate residues downstream of the terminal gala(1,3)gal epitope modulate the specificity of xenoreactive antibodies'
by: Milland, J., et al.
Published: (2008)
by: Milland, J., et al.
Published: (2008)
Studies on carbohydrate xenoantigens
by: Christiansen, D., et al.
Published: (2012)
by: Christiansen, D., et al.
Published: (2012)
Optimization of protein-protein docking for predicting Fc-protein interactions
by: Agostino, Mark, et al.
Published: (2016)
by: Agostino, Mark, et al.
Published: (2016)
Therapeutic antibodies: Discovery, design and deployment
by: Ramsland, Paul, et al.
Published: (2015)
by: Ramsland, Paul, et al.
Published: (2015)
The 'Auto-Mapic' map of Great Britain
by: O'Loughlin, Thomas
Published: (2015)
by: O'Loughlin, Thomas
Published: (2015)
Structural glycobiology: applications in organ transplantation
by: Christiansen, D., et al.
Published: (2012)
by: Christiansen, D., et al.
Published: (2012)
Ensemble Of Multiple Matchers For Finger Vein Recognition
by: Soh, Siang Loong
Published: (2017)
by: Soh, Siang Loong
Published: (2017)
Carbohydrates
by: Laurentin, A., et al.
Published: (2010)
by: Laurentin, A., et al.
Published: (2010)
Lecture digest - auto summarization and key points recognition
by: Yap, Melissa Chia Chean
Published: (2024)
by: Yap, Melissa Chia Chean
Published: (2024)
Logic of the map: Approaches and Procedures
by: Mucina, Ladislav, et al.
Published: (2006)
by: Mucina, Ladislav, et al.
Published: (2006)
Discriminant auto encoders for face recognition with expression and pose variations
by: Pathirage, C., et al.
Published: (2017)
by: Pathirage, C., et al.
Published: (2017)
Editorial: Structural and computational glycobiology - Immunity and infection
by: Agostino, Mark, et al.
Published: (2015)
by: Agostino, Mark, et al.
Published: (2015)
Human activity recognition based on wrist PPG via the ensemble method
by: Almanifi, Omair Rashed Abdulwareth, et al.
Published: (2022)
by: Almanifi, Omair Rashed Abdulwareth, et al.
Published: (2022)
The Regulation of Peptide Mimotope/Epitope Recognition by Monoclonal Antibodies
by: Smith, Richard Gary
Published: (2002)
by: Smith, Richard Gary
Published: (2002)
Ensemble Classifier for Recognition of Small Variation in
X-Bar Control Chart Patterns
by: Alwan, Waseem, et al.
Published: (2023)
by: Alwan, Waseem, et al.
Published: (2023)
Ensemble Classifier for Recognition of Small Variation in X-Bar Control Chart Patterns
by: Alwan, Waseem, et al.
Published: (2023)
by: Alwan, Waseem, et al.
Published: (2023)
Ensemble Classifier for Recognition of Small Variation in
X-Bar Control Chart Patterns
by: Alwan, Waseem, et al.
Published: (2023)
by: Alwan, Waseem, et al.
Published: (2023)
Ensemble Classifier for Recognition of Small Variation in X-Bar Control Chart Patterns
by: Alwan, Waseem, et al.
Published: (2023)
by: Alwan, Waseem, et al.
Published: (2023)
Ensemble Classifier for Recognition of Small Variation in X-Bar Control Chart Patterns
by: Waseem Alwan, Waseem Alwan, et al.
Published: (2023)
by: Waseem Alwan, Waseem Alwan, et al.
Published: (2023)
Ensemble Classifier for Recognition of Small Variation in X-Bar Control Chart Patterns
by: Alwan, Waseem, et al.
Published: (2023)
by: Alwan, Waseem, et al.
Published: (2023)
Stacked Face De-Noising Auto Encoders for Expression-Robust Face Recognition
by: Pathirage, C., et al.
Published: (2016)
by: Pathirage, C., et al.
Published: (2016)
Similar Items
-
AutoMap: A tool for analyzing protein–ligand recognition using multiple ligand binding modes
by: Agostino, Mark, et al.
Published: (2013) -
Antibody-ligand docking: Insights into peptide-carbohydrate mimicry
by: Yuriev, E., et al.
Published: (2008) -
Docking of carbohydrates into protein binding sites
by: Agostino, Mark, et al.
Published: (2012) -
Structural biology of antibody recognition of carbohydrate epitopes and potential uses for targeted cancer immunotherapies
by: Dingjan, T., et al.
Published: (2014) -
Molecular docking of carbohydrate ligands to antibodies: Structural validation against crystal structures
by: Agostillo, M., et al.
Published: (2009)